Evidence map›Paper›PMID 24477003›Full record

ArticleNature communications2014

Structures of an intramembrane vitamin K epoxide reductase homolog reveal control mechanisms for electron transfer.

Shixuan Liu, Wei Cheng, Ronald Fowle Grider, Guomin Shen, Weikai Li

Open access · bronzeAbstract read
In one paragraph

Article in Nature communications, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
8.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 45 citations in OpenAlex.

  1. Article
  2. Article
  3. Distinct enzymatic strategies forCritical reviews in biochemistry and molecular biology · 2023
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
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  10. Membrane properties that shape the evolution of membrane enzymes.Current opinion in structural biology · 2018
    Review
  11. Review
  12. Article
  13. Review
  14. Article
  15. Article
  16. Structural basis for catalysis at the membrane-water interface.Biochimica et biophysica acta. Molecular and cell biology of lipids · 2017
    Review
  17. Article
  18. Warfarin and vitamin K compete for binding to Phe55 in human VKOR.Nature structural & molecular biology · 2017
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Shixuan Liu1] Department of Biochemistry and Molecular Biophysics, Washington University School of Medicine, St Louis, Missouri 63110, USA [2].
Wei Cheng1] Department of Biochemistry and Molecular Biophysics, Washington University School of Medicine, St Louis, Missouri 63110, USA [2].
Ronald Fowle GriderDepartment of Biochemistry and Molecular Biophysics, Washington University School of Medicine, St Louis, Missouri 63110, USA.
Guomin ShenDepartment of Biochemistry and Molecular Biophysics, Washington University School of Medicine, St Louis, Missouri 63110, USA.
Weikai LiDepartment of Biochemistry and Molecular Biophysics, Washington University School of Medicine, St Louis, Missouri 63110, USA.
Washington University in St. Louis · US

Funding

NATIONAL RESEARCH SERVICE AWARD-MEDICAL SCIENTISTT32GM007200 · NIGMS · WASHINGTON UNIVERSITY · PI YOKOYAMA, WAYNE M. · 1985 to 2024
$59.8M
STRUCTURAL AND FUNCTIONAL BASIS OF THE VITAMIN K CYCLER01HL121718 · NHLBI · WASHINGTON UNIVERSITY · PI Weikai Li · 2014 to 2026
$5.2M
Structural and Biochemical Basis of the Vitamin K cycleR00HL097083 · NHLBI · WASHINGTON UNIVERSITY · PI LI, WEIKAI · 2011 to 2013
$735k
NHLBI NIH HHS 5R00HL097083NHLBI NIH HHS R00 HL097083NHLBI NIH HHS R01 HL121718NIGMS NIH HHS T32 GM007200NIGMS NIH HHS T32-GM007200-39
6 · The paper itself

Abstract

The intramembrane vitamin K epoxide reductase (VKOR) supports blood coagulation in humans and is the target of the anticoagulant warfarin. VKOR and its homologues generate disulphide bonds in organisms ranging from bacteria to humans. Here, to better understand the mechanism of VKOR catalysis, we report two crystal structures of a bacterial VKOR captured in different reaction states. These structures reveal a short helix at the hydrophobic active site of VKOR that alters between wound and unwound conformations. Motions of this 'horizontal helix' promote electron transfer by regulating the positions of two cysteines in an adjacent loop. Winding of the helix separates these 'loop cysteines' to prevent backward electron flow. Despite these motions, hydrophobicity at the active site is maintained to facilitate VKOR catalysis. Biochemical experiments suggest that several warfarin-resistant mutations act by changing the conformation of the horizontal helix. Taken together, these studies provide a comprehensive understanding of VKOR function.

Indexed as

Structural Homology, ProteinCatalytic DomainCrystallography, X-RayCysteineDrug ResistanceElectron TransportHydrophobic and Hydrophilic InteractionsMembrane ProteinsModels, MolecularMutationProtein Structure, SecondarySynechococcusVitamin K Epoxide ReductasesWarfarinCysteineMembrane ProteinsVitamin K Epoxide ReductasesWarfarin

Identifiers

PMID24477003
PMCPMC4360977
OpenAlexW2026075639

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.