Evidence map›Paper›PMID 24475115›Full record

ArticlePloS one2014

Diurnal oscillations of soybean circadian clock and drought responsive genes.

Juliana Marcolino-Gomes, Fabiana Aparecida Rodrigues, Renata Fuganti-Pagliarini, Claire Bendix, Thiago Jonas Nakayama, Brandon Celaya, Hugo Bruno Correa Molinari, Maria Cristina Neves de Oliveira, Frank G Harmon, Alexandre Nepomuceno

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
14.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 128 citations in OpenAlex.

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  10. The Roles of Circadian Clock Genes in Plant Temperature Stress Responses.International journal of molecular sciences · 2024
    Review
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  20. Identification and Characterization ofInternational journal of molecular sciences · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Juliana Marcolino-GomesEmbrapa Soybean, Brazilian Agricultural Research Corporation, Londrina, Paraná, Brazil ; Department of Biology, State University of Londrina, Londrina, Paraná, Brazil.
Fabiana Aparecida RodriguesEmbrapa Soybean, Brazilian Agricultural Research Corporation, Londrina, Paraná, Brazil.
Renata Fuganti-PagliariniEmbrapa Soybean, Brazilian Agricultural Research Corporation, Londrina, Paraná, Brazil.
Claire BendixPlant Gene Expression Center, ARS/USDA, Albany, California, USA and Department of Plant and Microbial Biology, University of California-Berkeley, Berkeley, California, USA.
Thiago Jonas NakayamaDepartment of Crop Science, Federal University of Viçosa, Viçosa, Minas Gerais, Brazil.
Brandon CelayaPlant Gene Expression Center, ARS/USDA, Albany, California, USA and Department of Plant and Microbial Biology, University of California-Berkeley, Berkeley, California, USA.
Hugo Bruno Correa MolinariEmbrapa LABEX US Plant Biotechnology, Plant Gene Expression Center-ARS/USDA, Albany, California, United States of America.
Maria Cristina Neves de OliveiraEmbrapa Soybean, Brazilian Agricultural Research Corporation, Londrina, Paraná, Brazil.
Frank G HarmonPlant Gene Expression Center, ARS/USDA, Albany, California, USA and Department of Plant and Microbial Biology, University of California-Berkeley, Berkeley, California, USA.
Alexandre NepomucenoEmbrapa Soybean, Brazilian Agricultural Research Corporation, Londrina, Paraná, Brazil ; Embrapa LABEX US Plant Biotechnology, Plant Gene Expression Center-ARS/USDA, Albany, California, United States of America.
Brazilian Agricultural Research Corporation · BRPlant Gene Expression Center · USUniversidade Federal de Viçosa · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rhythms produced by the endogenous circadian clock play a critical role in allowing plants to respond and adapt to the environment. While there is a well-established regulatory link between the circadian clock and responses to abiotic stress in model plants, little is known of the circadian system in crop species like soybean. This study examines how drought impacts diurnal oscillation of both drought responsive and circadian clock genes in soybean. Drought stress induced marked changes in gene expression of several circadian clock-like components, such as LCL1-, GmELF4- and PRR-like genes, which had reduced expression in stressed plants. The same conditions produced a phase advance of expression for the GmTOC1-like, GmLUX-like and GmPRR7-like genes. Similarly, the rhythmic expression pattern of the soybean drought-responsive genes DREB-, bZIP-, GOLS-, RAB18- and Remorin-like changed significantly after plant exposure to drought. In silico analysis of promoter regions of these genes revealed the presence of cis-elements associated both with stress and circadian clock regulation. Furthermore, some soybean genes with upstream ABRE elements were responsive to abscisic acid treatment. Our results indicate that some connection between the drought response and the circadian clock may exist in soybean since (i) drought stress affects gene expression of circadian clock components and (ii) several stress responsive genes display diurnal oscillation in soybeans.

Indexed as

DroughtsAbscisic AcidAdaptation, PhysiologicalAnalysis of VarianceArabidopsisCircadian ClocksCircadian RhythmGene Expression Regulation, PlantGlycine maxReal-Time Polymerase Chain ReactionSequence Analysis, RNAAbscisic Acid

Identifiers

PMID24475115
PMCPMC3903518
OpenAlexW2062503926

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.