Evidence map›Paper›PMID 24475065›Full record

ArticlePloS one2014

Novel giant siphovirus from Bacillus anthracis features unusual genome characteristics.

Holly H Ganz, Christina Law, Martina Schmuki, Fritz Eichenseher, Richard Calendar, Martin J Loessner, Wayne M Getz, Jonas Korlach, Wolfgang Beyer, Jochen Klumpp

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
5.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
  2. Article
  3. Lysins as a powerful alternative to combat Bacillus anthracis.Applied microbiology and biotechnology · 2024
    Review
  4. A Genomic Analysis of theInternational journal of molecular sciences · 2023
    Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 4 countries.

Holly H GanzUniversity of California, Berkeley, Department of Environmental Science, Policy & Management, Berkeley, California, United States of America.
Christina LawUniversity of California, Berkeley, Department of Environmental Science, Policy & Management, Berkeley, California, United States of America.
Martina SchmukiInstitute of Food, Nutrition and Health, ETH Zurich, Zurich, Switzerland.
Fritz EichenseherInstitute of Food, Nutrition and Health, ETH Zurich, Zurich, Switzerland.
Richard CalendarUniversity of California, Berkeley, Department of Molecular and Cellular Biology, Berkeley, California, United States of America.
Martin J LoessnerInstitute of Food, Nutrition and Health, ETH Zurich, Zurich, Switzerland.
Wayne M GetzUniversity of California, Berkeley, Department of Environmental Science, Policy & Management, Berkeley, California, United States of America ; School of Mathematical Sciences, University of KwaZulu-Natal, Durban, South Africa.
Jonas KorlachPacific Biosciences, Menlo Park, California, United States of America.
Wolfgang BeyerUniversity of Hohenheim, Institute of Environmental and Animal Hygiene, Stuttgart, Germany.
Jochen KlumppInstitute of Food, Nutrition and Health, ETH Zurich, Zurich, Switzerland.
ETH Zurich · CHUniversity of California, Berkeley · USPacific Biosciences (United States) · USUniversity of Hohenheim · DE

Funding

The ecology of environmentally maintained episodic anthrax in Esotha, NamibiaR01GM083863 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI GETZ, WAYNE M · 2008 to 2011
$1.7M
NIGMS NIH HHS GM083863NIGMS NIH HHS R01 GM083863
6 · The paper itself

Abstract

Here we present vB_BanS-Tsamsa, a novel temperate phage isolated from Bacillus anthracis, the agent responsible for anthrax infections in wildlife, livestock and humans. Tsamsa phage is a giant siphovirus (order Caudovirales), featuring a long, flexible and non-contractile tail of 440 nm (not including baseplate structure) and an isometric head of 82 nm in diameter. We induced Tsamsa phage in samples from two different carcass sites in Etosha National Park, Namibia. The Tsamsa phage genome is the largest sequenced Bacillus siphovirus, containing 168,876 bp and 272 ORFs. The genome features an integrase/recombinase enzyme, indicative of a temperate lifestyle. Among bacterial strains tested, the phage infected only certain members of the Bacillus cereus sensu lato group (B. anthracis, B. cereus and B. thuringiensis) and exhibited moderate specificity for B. anthracis. Tsamsa lysed seven out of 25 B. cereus strains, two out of five B. thuringiensis strains and six out of seven B. anthracis strains tested. It did not lyse B. anthracis PAK-1, an atypical strain that is also resistant to both gamma phage and cherry phage. The Tsamsa endolysin features a broader lytic spectrum than the phage host range, indicating possible use of the enzyme in Bacillus biocontrol.

Indexed as

PhylogenySoil MicrobiologyAnimalsBacillus anthracisBase SequenceBayes TheoremDemographyEndopeptidasesEquidaeGenome, ViralModels, GeneticMolecular Sequence DataNamibiaSequence Analysis, DNASiphoviridaeSpecies SpecificityendolysinEndopeptidases

Identifiers

PMID24475065
PMCPMC3903500
OpenAlexW2073056070

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.