Evidence map›Paper›PMID 24474652›Full record

ArticlePlant physiology2014

Remarkable reproducibility of enzyme activity profiles in tomato fruits grown under contrasting environments provides a roadmap for studies of fruit metabolism.

Benot Biais, Camille Bénard, Bertrand Beauvoit, Sophie Colombié, Duyên Prodhomme, Guillaume Ménard, Stéphane Bernillon, Bernadette Gehl, Hélène Gautier, Patricia Ballias and 4 more

Open access · hybridAbstract read
In one paragraph

Article in Plant physiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed
14.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

68 citing papers in PubMed, 138 citations in OpenAlex.

  1. Article
  2. Article
  3. Exogenous Salicylic Acid Improves Fruit Yield and Quality ofCurrent issues in molecular biology · 2026
    Article
  4. Article
  5. Article
  6. Genome-wide meta-QTL approach identifies consensus loci associated with agriculturally important tomato fruit traits.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. From Division to Death: Metabolomic Analysis ofPlants (Basel, Switzerland) · 2024
    Article
  14. Article
  15. Plant Heterotrophic Cultures: No Food, No Growth.Plants (Basel, Switzerland) · 2024
    Review
  16. Plant Life with and without Oxygen: A Metabolomics Approach.International journal of molecular sciences · 2023
    Review
  17. Article
  18. Article
  19. Article
  20. Grape ASR Regulates Glucose Transport, Metabolism and Signaling.International journal of molecular sciences · 2022
    Article

8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 3 countries.

Benot BiaisInstitut National de la Recherche Agronomique, Unité Mixte de Recherche 1332 Biologie du Fruit et Pathologie, F-33883 Villenave d'Ornon, France.
Camille Bénard
Bertrand Beauvoit
Sophie Colombié
Duyên Prodhomme
Guillaume Ménard
Stéphane Bernillon
Bernadette Gehl
Hélène Gautier
Patricia Ballias
Jean-Pierre Mazat
Lee Sweetlove
Michel Génard
Yves Gibon
Institut National de la Recherche Agronomique · MAPlantes et Système de Cultures Horticoles · FRUniversity of Oxford · GBUniversité de Bordeaux · FR

Funding

Biotechnology and Biological Sciences Research Council BB/I004653/1
6 · The paper itself

Abstract

To assess the influence of the environment on fruit metabolism, tomato (Solanum lycopersicum 'Moneymaker') plants were grown under contrasting conditions (optimal for commercial, water limited, or shaded production) and locations. Samples were harvested at nine stages of development, and 36 enzyme activities of central metabolism were measured as well as protein, starch, and major metabolites, such as hexoses, sucrose, organic acids, and amino acids. The most remarkable result was the high reproducibility of enzyme activities throughout development, irrespective of conditions or location. Hierarchical clustering of enzyme activities also revealed tight relationships between metabolic pathways and phases of development. Thus, cell division was characterized by high activities of fructokinase, glucokinase, pyruvate kinase, and tricarboxylic acid cycle enzymes, indicating ATP production as a priority, whereas cell expansion was characterized by enzymes involved in the lower part of glycolysis, suggesting a metabolic reprogramming to anaplerosis. As expected, enzymes involved in the accumulation of sugars, citrate, and glutamate were strongly increased during ripening. However, a group of enzymes involved in ATP production, which is probably fueled by starch degradation, was also increased. Metabolites levels seemed more sensitive than enzymes to the environment, although such differences tended to decrease at ripening. The integration of enzyme and metabolite data obtained under contrasting growth conditions using principal component analysis suggests that, with the exceptions of alanine amino transferase and glutamate and malate dehydrogenase and malate, there are no links between single enzyme activities and metabolite time courses or levels.

Indexed as

EnvironmentMetabolomeCarboxy-LyasesCluster AnalysisFructokinasesFruitHexosesOrgan SizePlant ProteinsPrincipal Component AnalysisReproducibility of ResultsSolanum lycopersicumStarchTime FactorsVacuolesWaterCarboxy-LyasesfructokinaseFructokinasesHexosesPlant ProteinsStarchWater

Identifiers

PMID24474652
PMCPMC3938614
OpenAlexW2044104647

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.