Evidence map›Paper›PMID 24474197›Full record

ArticleProtein & cell2014

Global DNA methylation and transcriptional analyses of human ESC-derived cardiomyocytes.

Ying Gu, Guang-Hui Liu, Nongluk Plongthongkum, Christopher Benner, Fei Yi, Jing Qu, Keiichiro Suzuki, Jiping Yang, Weiqi Zhang, Mo Li and 6 more

Open access · diamondAbstract read
In one paragraph

Article in Protein & cell, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 28 citations in OpenAlex.

  1. Review
  2. Cells · 2026
    Article
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  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Epigenetic Regulation of Cardiac Development and Disease through DNA Methylation.Journal of life sciences (Westlake Village, Calif.) · 2019
    Article
  10. Article
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  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 4 countries.

Ying GuGene Expression Laboratory, Salk Institute for Biological Studies, 10010 North Torrey Pines Road, La Jolla, CA, 92037, USA.
Guang-Hui Liu
Nongluk Plongthongkum
Christopher Benner
Fei Yi
Jing Qu
Keiichiro Suzuki
Jiping Yang
Weiqi Zhang
Mo Li
Nuria Montserrat
Isaac Crespo
Antonio Del Sol
Concepcion Rodriguez Esteban
Kun Zhang
Juan Carlos Izpisua Belmonte
Salk Institute for Biological Studies · USInstitute of Biophysics · CNUniversity of Luxembourg · LUCenter of Regenerative Medicine in Barcelona · ESShanghai Institute of Materia Medica · CN

Funding

Viral Vector Core (VVC)P30CA014195 · NCI · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI Ye Zheng · 1985 to 2026
$82.8M
REGULATORY GENOMIC STUDIES IN A COHORT OF IPS CELL DERIVED CARDIOMYOCYTESU01HL107442 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI EVANS, SYLVIA M, FRAZER, KELLY A · 2011 to 2016
$9.8M
Genome-methylome InteractionsR01GM097253 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ZHANG, KUN · 2011 to 2014
$1.4M
NCI NIH HHS P30 CA014195NHLBI NIH HHS U01 HL107442NIGMS NIH HHS R01 GM097253
6 · The paper itself

Abstract

With defined culture protocol, human embryonic stem cells (hESCs) are able to generate cardiomyocytes in vitro, therefore providing a great model for human heart development, and holding great potential for cardiac disease therapies. In this study, we successfully generated a highly pure population of human cardiomyocytes (hCMs) (>95% cTnT(+)) from hESC line, which enabled us to identify and characterize an hCM-specific signature, at both the gene expression and DNA methylation levels. Gene functional association network and gene-disease network analyses of these hCM-enriched genes provide new insights into the mechanisms of hCM transcriptional regulation, and stand as an informative and rich resource for investigating cardiac gene functions and disease mechanisms. Moreover, we show that cardiac-structural genes and cardiac-transcription factors have distinct epigenetic mechanisms to regulate their gene expression, providing a better understanding of how the epigenetic machinery coordinates to regulate gene expression in different cell types.

Indexed as

DNA MethylationCell DifferentiationCell LineEmbryonic Stem CellsEpigenesis, GeneticGene Expression ProfilingGene Expression RegulationGene Regulatory NetworksHumansMyocytes, CardiacTranscription, Genetic

Identifiers

PMID24474197
PMCPMC3938846
OpenAlexW2171351049

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.