ArticleBMC genomics2014
Development of highly polymorphic simple sequence repeat markers using genome-wide microsatellite variant analysis in Foxtail millet [Setaria italica (L.) P. Beauv].
Article in BMC genomics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.
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Who cites it
37 citing papers in PubMed, 93 citations in OpenAlex.
- Role of Millets for Food Security Under Climate Change.Plant-environment interactions (Hoboken, N.J.) · 2026Review
- Genetic linkage map construction and QTL mapping for panicle-related traits in foxtail millet (Molecular breeding : new strategies in plant improvement · 2025Article
- De Novo Transcriptome Assembly of Rice Bean (Plants (Basel, Switzerland) · 2024Article
- Review
- Development of EST-SSR primers and genetic diversity analysis of the southern blight pathogenFrontiers in microbiology · 2023Article
- Small cardamom genome: development and utilization of microsatellite markers from a draft genome sequence ofFrontiers in plant science · 2023Article
- Multi-omics intervention inFrontiers in plant science · 2022Review
- Genome-Wide DNA Polymorphism Analysis and Molecular Marker Development for theFrontiers in plant science · 2021Article
- Article
- QTL mapping of yield component traits on bin map generated from resequencing a RIL population of foxtail millet (Setaria italica).BMC genomics · 2020Article
- Barnyard Millet for Food and Nutritional Security: Current Status and Future Research Direction.Frontiers in genetics · 2020Review
- SiSTL1, encoding a large subunit of ribonucleotide reductase, is crucial for plant growth, chloroplast biogenesis, and cell cycle progression in Setaria italica.Journal of experimental botany · 2019Article
- Generation and Characterization of a Foxtail Millet (Frontiers in plant science · 2019Article
- Comparative genome-wide characterization leading to simple sequence repeat marker development for Nicotiana.BMC genomics · 2018Article
- SiYGL2 Is Involved in the Regulation of Leaf Senescence and Photosystem II Efficiency inFrontiers in plant science · 2018Article
- SiSTL2 Is Required for Cell Cycle, Leaf Organ Development, Chloroplast Biogenesis, and Has Effects on CFrontiers in plant science · 2018Article
- Domestication and Improvement in the Model C4 Grass, Setaria.Frontiers in plant science · 2018Review
- A high-density genetic map and QTL analysis of agronomic traits in foxtail millet [Setaria italica (L.) P. Beauv.] using RAD-seq.PloS one · 2017Article
- Millets for Next Generation Climate-Smart Agriculture.Frontiers in plant science · 2017Article
- Assembling the Setaria italica L. Beauv. genome into nine chromosomes and insights into regions affecting growth and drought tolerance.Scientific reports · 2016Article
Corrections and comments
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Authors and funding
19 authors at 6 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundFoxtail millet (Setaria italica (L.) Beauv.) is an important gramineous grain-food and forage crop. It is grown worldwide for human and livestock consumption. Its small genome and diploid nature have led to foxtail millet fast becoming a novel model for investigating plant architecture, drought tolerance and C4 photosynthesis of grain and bioenergy crops. Therefore, cost-effective, reliable and highly polymorphic molecular markers covering the entire genome are required for diversity, mapping and functional genomics studies in this model species.
resultA total of 5,020 highly repetitive microsatellite motifs were isolated from the released genome of the genotype 'Yugu1' by sequence scanning. Based on sequence comparison between S. italica and S. viridis, a set of 788 SSR primer pairs were designed. Of these primers, 733 produced reproducible amplicons and were polymorphic among 28 Setaria genotypes selected from diverse geographical locations. The number of alleles detected by these SSR markers ranged from 2 to 16, with an average polymorphism information content of 0.67. The result obtained by neighbor-joining cluster analysis of 28 Setaria genotypes, based on Nei's genetic distance of the SSR data, showed that these SSR markers are highly polymorphic and effective.
conclusionsA large set of highly polymorphic SSR markers were successfully and efficiently developed based on genomic sequence comparison between different genotypes of the genus Setaria. The large number of new SSR markers and their placement on the physical map represent a valuable resource for studying diversity, constructing genetic maps, functional gene mapping, QTL exploration and molecular breeding in foxtail millet and its closely related species.
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