Evidence map›Paper›PMID 24471933›Full record

ArticleBiometrics2014

A penalized EM algorithm incorporating missing data mechanism for Gaussian parameter estimation.

Lin S Chen, Ross L Prentice, Pei Wang

Abstract read
In one paragraph

Article in Biometrics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Robust estimation using multivariateJournal of applied statistics · 2021
    Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Lin S ChenDepartment of Health Studies, University of Chicago, 5841 S Maryland Ave, Chicago, Illinois, U.S.A.
Ross L Prentice
Pei Wang

Funding

Proteo-genomic Discovery, Prioritization and Verification of Cancer BiomarkersU24CA160034 · NCI · BROAD INSTITUTE, INC. · PI CARR, STEVEN A, PAULOVICH, AMANDA G · 2011 to 2016
$16.2M
Use of Biomarkers in Diagnosis, Prognosis, Risk Prediction and Early Detection ofP01CA053996 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI HSU, LI · 1991 to 2015
$9.4M
Statistical Methods for Integrative Analysis of Genomics and Proteomics DataR01GM082802 · NIGMS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI WANG, PEI · 2008 to 2012
$1.4M
Multivariate functional analysis of the genetic basis of cancerR03CA174984 · NCI · UNIVERSITY OF CHICAGO · PI CHEN, LIN · 2013 to 2014
$158k
NCI NIH HHS P01 CA053996NCI NIH HHS P01CA53996NCI NIH HHS R03 CA174984NCI NIH HHS R03CA174984NCI NIH HHS U24 CA160034NIGMS NIH HHS R01 GM082802NIGMS NIH HHS R01GM082802PHS HHS SUBCA160034
6 · The paper itself

Abstract

Missing data rates could depend on the targeted values in many settings, including mass spectrometry-based proteomic profiling studies. Here, we consider mean and covariance estimation under a multivariate Gaussian distribution with non-ignorable missingness, including scenarios in which the dimension (p) of the response vector is equal to or greater than the number (n) of independent observations. A parameter estimation procedure is developed by maximizing a class of penalized likelihood functions that entails explicit modeling of missing data probabilities. The performance of the resulting "penalized EM algorithm incorporating missing data mechanism (PEMM)" estimation procedure is evaluated in simulation studies and in a proteomic data illustration.

Indexed as

AlgorithmsBiometryComputer SimulationFungal ProteinsHumansLikelihood FunctionsMass SpectrometryModels, StatisticalMultivariate AnalysisNormal DistributionProteomicsFungal ProteinsExpectation-maximization (EM) algorithmMaximum penalized likelihood estimateNot-missing-at-random (NMAR)

Identifiers

PMID24471933
PMCPMC4061266

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.