Evidence map›Paper›PMID 24470219›Full record

ArticleG3 (Bethesda, Md.)2014

MicroRNA regulation of bovine monocyte inflammatory and metabolic networks in an in vivo infection model.

Nathan Lawless, Timothy A Reinhardt, Kenneth Bryan, Mike Baker, Bruce Pesch, Duane Zimmerman, Kurt Zuelke, Tad Sonstegard, Cliona O'Farrelly, John D Lippolis and 1 more

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 53 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 3 countries.

Nathan LawlessAnimal and Bioscience Research Department, Animal and Grassland Research and Innovation Centre, Teagasc, Grange, Dunsany, County Meath, Ireland School of Biochemistry and Immunology, Trinity College, Dublin 2, Ireland.
Timothy A ReinhardtUnited States Department of Agriculture, Agricultural Research Services, National Animal Disease Center, Ames, Iowa 50010.
Kenneth BryanAnimal and Bioscience Research Department, Animal and Grassland Research and Innovation Centre, Teagasc, Grange, Dunsany, County Meath, Ireland.
Mike BakerIowa State University, DNA Facility, Molecular Biology Building, Ames, Iowa 50010.
Bruce PeschUnited States Department of Agriculture, Agricultural Research Services, National Animal Disease Center, Ames, Iowa 50010.
Duane ZimmermanUnited States Department of Agriculture, Agricultural Research Services, National Animal Disease Center, Ames, Iowa 50010.
Kurt ZuelkeAustralian Animal Health Laboratory, Commonwealth Scientific and Industrial Research Organisation, East Geelong Victoria 3219, Australia.
Tad SonstegardUnited States Department of Agriculture, Agricultural Research Services, Beltsville, Maryland 20705-1350.
Cliona O'FarrellySchool of Biochemistry and Immunology, Trinity College, Dublin 2, Ireland.
John D LippolisUnited States Department of Agriculture, Agricultural Research Services, National Animal Disease Center, Ames, Iowa 50010 david.lynn@teagasc.ie john.lippolis@ars.usda.gov.
David J LynnAnimal and Bioscience Research Department, Animal and Grassland Research and Innovation Centre, Teagasc, Grange, Dunsany, County Meath, Ireland david.lynn@teagasc.ie john.lippolis@ars.usda.gov.
Teagasc - The Irish Agriculture and Food Development Authority · IEUnited States Department of Agriculture · USAgricultural Research Service · USAustralian Centre for Disease Preparedness · AUIowa State University · USTrinity College Dublin · IE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bovine mastitis is an inflammation-driven disease of the bovine mammary gland that costs the global dairy industry several billion dollars per year. Because disease susceptibility is a multifactorial complex phenotype, an integrative biology approach is required to dissect the molecular networks involved. Here, we report such an approach using next-generation sequencing combined with advanced network and pathway biology methods to simultaneously profile mRNA and miRNA expression at multiple time points (0, 12, 24, 36 and 48 hr) in milk and blood FACS-isolated CD14(+) monocytes from animals infected in vivo with Streptococcus uberis. More than 3700 differentially expressed (DE) genes were identified in milk-isolated monocytes (MIMs), a key immune cell recruited to the site of infection during mastitis. Upregulated genes were significantly enriched for inflammatory pathways, whereas downregulated genes were enriched for nonglycolytic metabolic pathways. Monocyte transcriptional changes in the blood, however, were more subtle but highlighted the impact of this infection systemically. Genes upregulated in blood-isolated monocytes (BIMs) showed a significant association with interferon and chemokine signaling. Furthermore, 26 miRNAs were DE in MIMs and three were DE in BIMs. Pathway analysis revealed that predicted targets of downregulated miRNAs were highly enriched for roles in innate immunity (FDR < 3.4E-8), particularly TLR signaling, whereas upregulated miRNAs preferentially targeted genes involved in metabolism. We conclude that during S. uberis infection miRNAs are key amplifiers of monocyte inflammatory response networks and repressors of several metabolic pathways.

Indexed as

Gene Expression RegulationMetabolic Networks and PathwaysAnimalsCattleCluster AnalysisFemaleGene Expression ProfilingGene Regulatory NetworksImmunity, InnateInflammationLipopolysaccharide ReceptorsMastitis, BovineMicroRNAsMonocytesPhenotypeRNA InterferenceLipopolysaccharide ReceptorsMicroRNAsRNA, Messengercomplex geneticscomplex immunityinfectioninnate immunitymicroRNAresistanceRNAseqtolerancetranscriptional networks

Identifiers

PMID24470219
PMCPMC4065264
OpenAlexW2102122219

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.