Evidence map›Paper›PMID 24470020›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2014

Biophysical and proteomic characterization strategies for cysteine modifications in Ras GTPases.

G Aaron Hobbs, Harsha P Gunawardena, Sharon L Campbell

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Review
  3. Antioxidants (Basel, Switzerland) · 2022
    Review
  4. Article
  5. Redox regulation of Rac1 by thiol oxidation.Free radical biology & medicine · 2015
    Article
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

G Aaron HobbsDepartment of Biochemistry and Biophysics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Harsha P Gunawardena
Sharon L Campbell
University of North Carolina at Chapel Hill · US

Funding

MOLECULAR AND CELLULAR BIOPHYSICS TRAINING PROGRAMT32GM008570 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI KUHLMAN, BRIAN A, SLEP, KEVIN C · 1995 to 2022
$5.1M
Structure and Regulation of DBl ProteinsR01CA089614 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI CAMPBELL, SHARON L · 2001 to 2012
$2.5M
Regulation of Ras by MonoubiquitinationR01GM106227 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI CAMPBELL, SHARON L · 2013 to 2016
$1.5M
Redox Regulation of Ras and Ras-Related GTPasesR01GM075431 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI CAMPBELL, SHARON L · 2005 to 2008
$1.1M
NCI NIH HHS R01 CA089614NCI NIH HHS R01CA089614NIGMS NIH HHS R01 GM075431NIGMS NIH HHS R01 GM106227NIGMS NIH HHS R01GM75431NIGMS NIH HHS T32 GM008570NIGMS NIH HHS T32GM008570
6 · The paper itself

Abstract

Cysteine is one of the most reactive amino acids and is modified by a number of oxidants. The reactivity of cysteines is dependent on the thiol pK a; however, measuring cysteine pK a values is nontrivial. Ras family GTPases have been shown to contain a free cysteine that is sensitive to oxidation, and free radical-mediated oxidation of this cysteine has been shown to be activating. Here, we present a new technique that allows for measuring cysteine pK a values using a fluorescent detection system with the molecule 4-fluoro-7-aminosulfonylbenzofurazan (ABD-F). In addition, we also describe how to generate several oxidants. Lastly, we describe several mass spectrometry-based experiments and the necessary adjustments to the experiments to detect cysteine oxidation.

Indexed as

BenzoxazolesBiophysicsCysteineMass SpectrometryNitrosationProteomicsras ProteinsReactive Nitrogen SpeciesReactive Oxygen SpeciesbenzofurazanBenzoxazolesCysteineras ProteinsReactive Nitrogen SpeciesReactive Oxygen Species

Identifiers

PMID24470020
PMCPMC4067004
OpenAlexW1822382748

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.