Evidence map›Paper›PMID 24467693›Full record

ArticleJournal of proteome research2014

Proteomic profile of Cryptococcus neoformans biofilm reveals changes in metabolic processes.

Lucélia Santi, Walter O Beys-da-Silva, Markus Berger, Diego Calzolari, Jorge A Guimarães, James J Moresco, John R Yates

Open access · bronzeAbstract read
In one paragraph

Article in Journal of proteome research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 77 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Insights from Mass Spectrometry-Based Proteomics onJournal of fungi (Basel, Switzerland) · 2025
    Review
  6. Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. A Limited Number of Amino Acid Permeases Are Crucial forInternational journal of microbiology · 2024
    Review
  13. Review
  14. Article
  15. No Chance to Survive:Antibiotics (Basel, Switzerland) · 2023
    Article
  16. One Step Forward with Dry Surface Biofilm (DSB) ofInternational journal of molecular sciences · 2022
    Article
  17. Article
  18. Article
  19. Proteome ofInternational journal of molecular sciences · 2022
    Article
  20. Cryptococcus liquefaciens isolated from the hand of a healthcare professional in a neonatal intensive care unit.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Lucélia SantiDepartment of Chemical Physiology, The Scripps Research Institute , North Torrey Pines Road, Suite 11, La Jolla, California 92037, United States.
Walter O Beys-da-Silva
Markus Berger
Diego Calzolari
Jorge A Guimarães
James J Moresco
John R Yates
Scripps Research Institute · USUniversidade Federal do Rio Grande do Sul · BR

Funding

ZDS2P REGULATES SWE1P-DEPENDENT POLARIZED CELL GROWTH IN S CEREVISIAEP41RR011823 · NCRR · UNIVERSITY OF WASHINGTON · PI DAVIS, TRACY · 1996 to 2011
$24.7M
TrainingP41GM103533 · NIGMS · UNIVERSITY OF WASHINGTON · PI MACCOSS, MICHAEL · 2012 to 2021
$20.7M
Proteomic Profiling of CFTR Protein InteractionR01HL079442 · NHLBI · SCRIPPS RESEARCH INSTITUTE, THE · PI BALCH, WILLIAM EDWARD, YATES III, JOHN R · 2005 to 2014
$4.6M
Genetic Regulation of the Response to Dietary RestrictionR01AG027463 · NIA · UNIVERSITY OF CALIFORNIA BERKELEY · PI DILLIN, ANDREW G · 2008 to 2012
$2.4M
NCRR NIH HHS 5P41RR011823-17NCRR NIH HHS P41 RR011823NHLBI NIH HHS 5R01 HL019442NHLBI NIH HHS R01 HL079442NIA NIH HHS R01 AG027463NIA NIH HHS R01AG027463-04NIGMS NIH HHS 8 P41 GM103533-17NIGMS NIH HHS P41 GM103533
6 · The paper itself

Abstract

Cryptococcus neoformans, a pathogenic yeast, causes meningoencephalitis, especially in immunocompromised patients, leading in some cases to death. Microbes in biofilms can cause persistent infections, which are harder to treat. Cryptococcal biofilms are becoming common due to the growing use of brain valves and other medical devices. Using shotgun proteomics we determine the differences in protein abundance between biofilm and planktonic cells. Applying bioinformatic tools, we also evaluated the metabolic pathways involved in biofilm maintenance and protein interactions. Our proteomic data suggest general changes in metabolism, protein turnover, and global stress responses. Biofilm cells show an increase in proteins related to oxidation-reduction, proteolysis, and response to stress and a reduction in proteins related to metabolic process, transport, and translation. An increase in pyruvate-utilizing enzymes was detected, suggesting a shift from the TCA cycle to fermentation-derived energy acquisition. Additionally, we assign putative roles to 33 proteins previously categorized as hypothetical. Many changes in metabolic enzymes were identified in studies of bacterial biofilm, potentially revealing a conserved strategy in biofilm lifestyle.

Indexed as

BiofilmsCryptococcus neoformansFungal ProteinsMetabolic Networks and PathwaysMolecular Sequence AnnotationOxidation-ReductionPlanktonProtein Interaction MappingProteolysisProteomicsTandem Mass SpectrometryFungal Proteins

Identifiers

PMID24467693
PMCPMC3993910
OpenAlexW2321059444

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.