Evidence map›Paper›PMID 24467603›Full record

Trial reportAmerican journal of respiratory and critical care medicine2014

Genetic variation in the prostaglandin E2 pathway is associated with primary graft dysfunction.

Joshua M Diamond, Tatiana Akimova, Altaf Kazi, Rupal J Shah, Edward Cantu, Rui Feng, Matthew H Levine, Steven M Kawut, Nuala J Meyer, James C Lee and 15 more

Abstract readClinical TrialMulticenter Study
In one paragraph

Trial report in American journal of respiratory and critical care medicine, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
5.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 36 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Risk of primary graft dysfunction following lung transplantation in selected adults with connective tissue disease-associated interstitial lung disease.The Journal of heart and lung transplantation : the official publication of the International Society for Heart Transplantation · 2021
    Article
  7. Article
  8. Lung Innate Lymphoid Cell Composition Is Altered in Primary Graft Dysfunction.American journal of respiratory and critical care medicine · 2020
    Article
  9. Association of long pentraxin-3 with pulmonary hypertension and primary graft dysfunction in lung transplant recipients.The Journal of heart and lung transplantation : the official publication of the International Society for Heart Transplantation · 2018
    Article
  10. Article
  11. Article
  12. Peripheral Blood Gene Expression Changes Associated With Primary Graft Dysfunction After Lung Transplantation.American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons · 2017
    Article
  13. Review
  14. Article
  15. Bone disease in cystic fibrosis: new pathogenic insights opening novel therapies.Osteoporosis international : a journal established as result of cooperation between the European Foundation for Osteoporosis and the National Osteoporosis Foundation of the USA · 2016
    Review
  16. The relationship between plasma lipid peroxidation products and primary graft dysfunction after lung transplantation is modified by donor smoking and reperfusion hyperoxia.The Journal of heart and lung transplantation : the official publication of the International Society for Heart Transplantation · 2016
    Article
  17. Protein Quantitative Trait Loci Analysis Identifies Genetic Variation in the Innate Immune Regulator TOLLIP in Post-Lung Transplant Primary Graft Dysfunction Risk.American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons · 2016
    Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

25 authors at 12 institutions in 1 country.

Joshua M Diamond1 Pulmonary, Allergy, and Critical Care Division.
Tatiana Akimova
Altaf Kazi
Rupal J Shah
Edward Cantu
Rui Feng
Matthew H Levine
Steven M Kawut
Nuala J Meyer
James C Lee
Wayne W Hancock
Richard Aplenc
Lorraine B Ware
Scott M Palmer
Sangeeta Bhorade
Vibha N Lama
Ann Weinacker
Jonathan Orens
Keith Wille
Maria Crespo
David J Lederer
Selim Arcasoy
Ejigayehu Demissie
Jason D Christie
Lung Transplant Outcomes Group
California University of Pennsylvania · USPulmonary and Allergy Associates · USChildren's Hospital of Philadelphia · USColumbia University · USDuke University · USJohns Hopkins University · USStanford University · USUniversity of Alabama at Birmingham · USUniversity of Chicago · USUniversity of Michigan · USUniversity of Pittsburgh · USVanderbilt University · US

Funding

Clinical Risk Factors for Primary Graft DysfunctionR01HL087115 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI CHRISTIE, JASON D · 2007 to 2017
$7.1M
Genetics of primary graft dysfunctionR01HL081619 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI CHRISTIE, JASON D · 2007 to 2011
$3.9M
Obesity, Inflammation, and Lung Injury After Lung TransplantationR01HL114626 · NHLBI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CHRISTIE, JASON D, LEDERER, DAVID J. · 2013 to 2016
$3.1M
Role of anti-Col (V) immunity in primary graft dysfunctionR01HL096845 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI CHRISTIE, JASON D, WILKES, DAVID S · 2010 to 2013
$2.2M
Career Development for Genomic/Genetic Studies in Lung DiseasesK12HL090021 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI PACK, ALLAN I · 2007 to 2012
$2.0M
Foxp3+ Treg Cells & Primary Graft Dysfunction in Clinical Lung Tx RecipientsR01HL114468 · NHLBI · CHILDREN'S HOSP OF PHILADELPHIA · PI HANCOCK, WAYNE WILLIAM · 2012 to 2015
$1.7M
Midcareer Investigator Award in Patient-Oriented Research in Acute Lung InjuryK24HL103836 · NHLBI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI WARE, LORRAINE B · 2010 to 2020
$1.6M
Mentored Patient-Oriented Research in Pulmonary Arterial HypertensionK24HL103844 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI KAWUT, STEVEN M · 2011 to 2020
$1.6M
Mentored Patient Oriented Research in Lung TransplantationK24HL115354 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI CHRISTIE, JASON D · 2012 to 2021
$1.2M
Lung Transplant donor: prediction, evaluation, and mechanismK23HL116656 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI CANTU, EDWARD · 2013 to 2017
$872k
Histone/Protein Deacetylase Inhibitors Minimize Renal Ischemia-Reperfusion InjuryK08DK092282 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI LEVINE, MATTHEW HOWARD · 2011 to 2015
$768k
NHLBI NIH HHS K12 HL090021NHLBI NIH HHS K23 HL116656NHLBI NIH HHS K24 HL103836NHLBI NIH HHS K24 HL103844NHLBI NIH HHS K24 HL115354NHLBI NIH HHS R01 HL081619NHLBI NIH HHS R01 HL087115NHLBI NIH HHS R01 HL096845NHLBI NIH HHS R01 HL114468NHLBI NIH HHS R01 HL114626NIDDK NIH HHS K08 DK092282
6 · The paper itself

Abstract

rationaleBiologic pathways with significant genetic conservation across human populations have been implicated in the pathogenesis of primary graft dysfunction (PGD). The evaluation of the role of recipient genetic variation in PGD has thus far been limited to single, candidate gene analyses.

objectivesWe sought to identify genetic variants in lung transplant recipients that are responsible for increased risk of PGD using a two-phase large-scale genotyping approach.

methodsPhase 1 was a large-scale candidate gene association study of the multicenter, prospective Lung Transplant Outcomes Group cohort. Phase 2 included functional evaluation of selected variants and a bioinformatics screening of variants identified in phase 1. MEASUREMENTS AND MAIN

resultsAfter genetic data quality control, 680 lung transplant recipients were included in the analysis. In phase 1, a total of 17 variants were significantly associated with PGD, four of which were in the prostaglandin E2 family of genes. Among these were a coding variant in the gene encoding prostaglandin E2 synthase (PTGES2; P = 9.3 × 10(-5)) resulting in an arginine to histidine substitution at amino acid position 298, and three variants in a block containing the 5' promoter and first intron of the PTGER4 gene (encoding prostaglandin E2 receptor subtype 4; all P < 5 × 10(-5)). Functional evaluation in regulatory T cells identified that rs4434423A in the PTGER4 gene was associated with differential suppressive function of regulatory T cells.

conclusionsFurther research aimed at replication and additional functional insight into the role played by genetic variation in prostaglandin E2 synthetic and signaling pathways in PGD is warranted.

Indexed as

Lung TransplantationPolymorphism, Single NucleotideBiomarkersComputational BiologyDinoprostoneFemaleGenetic Association StudiesGenetic MarkersGenotypeGenotyping TechniquesHumansIntramolecular OxidoreductasesMaleMiddle AgedPrimary Graft DysfunctionProspective StudiesBiomarkersDinoprostoneGenetic MarkersIntramolecular OxidoreductasesProstaglandin-E SynthasesPTGER4 protein, humanPTGES2 protein, humanReceptors, Prostaglandin E, EP4 Subtype

Identifiers

PMID24467603
PMCPMC3977709
OpenAlexW2128832725

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.