Evidence map›Paper›PMID 24466340›Full record

ArticlePloS one2014

Histone deacetylase inhibitors selectively target homology dependent DNA repair defective cells and elevate non-homologous endjoining activity.

Stephanie Smith, Jennifer Fox, Marco Mejia, Wanvipa Ruangpradit, Alihossein Saberi, Sunmi Kim, Yongjun Choi, Sehyun Oh, Yucai Wang, Kyungho Choi and 5 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 20 citations in OpenAlex.

  1. Trial
  2. Article
  3. Article
  4. Article
  5. Article
  6. Genome-Protecting Compounds as Potential Geroprotectors.International journal of molecular sciences · 2020
    Review
  7. Review
  8. Article
  9. Knockdown of Rad9A enhanced DNA damage induced by trichostatin A in esophageal cancer cells.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2016
    Article
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 8 institutions in 3 countries.

Stephanie SmithGenome Instability Section, Genetics and Molecular Biology Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland, United States of America.
Jennifer FoxGenome Instability Section, Genetics and Molecular Biology Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland, United States of America.
Marco MejiaDepartment of Molecular Biology and Microbiology, College of Medicine, University of Central Florida, Orlando, Florida, United States of America.
Wanvipa RuangpraditDepartment of Molecular Biology and Microbiology, College of Medicine, University of Central Florida, Orlando, Florida, United States of America.
Alihossein SaberiDepartment of Radiation Genetics Kyoto University, Medical School, Kyoto, 606-8501 Japan.
Sunmi KimGenome Instability Section, Genetics and Molecular Biology Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland, United States of America ; Department of Radiation Genetics Kyoto University, Medical School, Kyoto, 606-8501 Japan ; Department of Environmental Health School of Public Hearth, Seoul National University, Seoul, Korea.
Yongjun ChoiGenome Instability Section, Genetics and Molecular Biology Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland, United States of America.
Sehyun OhDepartment of Biochemistry, Molecular Biology and Biophysics, University of Minnesota Medical School, Minneapolis, Minnesota, United States of America.
Yucai WangDepartment of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas, United States of America ; The University of Texas Graduate School of Biomedical Sciences at Houston, Houston Texas, United States of America.
Kyungho ChoiDepartment of Environmental Health School of Public Hearth, Seoul National University, Seoul, Korea.
Lei LiDepartment of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas, United States of America ; Department of Genetics, The University of Texas MD Anderson Cancer Center, Houston, Texas, United States of America.
Eric A HendricksonDepartment of Biochemistry, Molecular Biology and Biophysics, University of Minnesota Medical School, Minneapolis, Minnesota, United States of America.
Shunichi TakedaDepartment of Radiation Genetics Kyoto University, Medical School, Kyoto, 606-8501 Japan.
Mark MullerDepartment of Molecular Biology and Microbiology, College of Medicine, University of Central Florida, Orlando, Florida, United States of America.
Kyungjae MyungGenome Instability Section, Genetics and Molecular Biology Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland, United States of America.
National Human Genome Research Institute · USUniversity of Central Florida · USKyoto University · JPNational Institutes of Health · USUniversity of Minnesota Medical Center · USSeoul National University · KRThe University of Texas MD Anderson Cancer Center · USUniversity of Houston · US

Funding

Recognition and processing of complex lesions by components from multiple DNAP01CA097175 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI NAIRN, RODNEY S · 2004 to 2014
$15.3M
Training Grant: Functional Proteomics of AgingT32AG029796 · NIA · UNIVERSITY OF MINNESOTA · PI EDGAR A ARRIAGA, Douglas G Mashek · 2008 to 2026
$6.6M
The mechanism of Cas9/CRISPR-initiated genome modification in human somatic cellsR01GM088351 · NIGMS · UNIVERSITY OF MINNESOTA · PI HENDRICKSON, ERIC A · 2010 to 2018
$2.3M
Ku regulates non-homologous end joining pathways in human somatic cellsR01CA154461 · NCI · UNIVERSITY OF MINNESOTA · PI HENDRICKSON, ERIC A · 2011 to 2015
$1.6M
Identification of chemotherapeutic sensitizersZIAHG200376 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI MYUNG, KYUNGJAE · 2012 to 2015
$1.5M
ATP-Dependent Chromatin Remodeling and Genomic Instability in Mammalian CellsR01CA127945 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI LI, LEI · 2008 to 2013
$1.4M
Intramural NIH HHSNCI NIH HHS CA097175NCI NIH HHS CA127945NCI NIH HHS CA154461NCI NIH HHS P01 CA097175NCI NIH HHS R01 CA127945NCI NIH HHS R01 CA154461NIA NIH HHS T32 AG029796NIGMS NIH HHS GM088351NIGMS NIH HHS R01 GM088351NIMH NIH HHS R03 MH092164-01
6 · The paper itself

Abstract

backgroundWe have previously used the ATAD5-luciferase high-throughput screening assay to identify genotoxic compounds with potential chemotherapeutic capabilities. The successful identification of known genotoxic agents, including the histone deacetylase inhibitor (HDACi) trichostatin A (TSA), confirmed the specificity of the screen since TSA has been widely studied for its ability to cause apoptosis in cancer cells. Because many cancers have acquired mutations in DNA damage checkpoints or repair pathways, we hypothesized that these cancers may be susceptible to treatments that target compensatory pathways. Here, we used a panel of isogenic chicken DT40 B lymphocyte mutant and human cell lines to investigate the ability of TSA to define selective pathways that promote HDACi toxicity.

resultsHDACi induced a DNA damage response and reduced viability in all repair deficient DT40 mutants although ATM-nulls were least affected. The most dramatic sensitivity was observed in mutants lacking the homology dependent repair (HDR) factor BLM or the non-homologous end-joining (NHEJ) and HDR factors, KU/RAD54, suggesting an involvement of either HDR or NHEJ in HDACi-induced cell death. To extend these findings, we measured the frequencies of HDR and NHEJ after HDACi treatment and monitored viability in human cell lines comparably deficient in HDR or NHEJ. Although no difference in HDR frequency was observed between HDACi treated and untreated cells, HDR-defective human cell lines were clearly more sensitive than wild type. Unexpectedly, cells treated with HDACis showed a significantly elevated NHEJ frequency.

conclusionsHDACi targeting drugs induced significant increases in NHEJ activity in human cell lines but did not alter HDR frequency. Moreover, HDR is required for cellular resistance to HDACi therapy; therefore, NHEJ does not appear to be a critical axis for HDACi resistance. Rather, HDACi compounds induced DNA damage, most likely double strand breaks (DSBs), and HDR proficiency is correlated with cell survival.

Indexed as

AnimalsAntigens, NuclearBlotting, WesternB-LymphocytesCells, CulturedCell SurvivalChickensDNA-Binding ProteinsDNA DamageDNA End-Joining RepairDNA RepairElectrophoresis, Gel, Pulsed-FieldFluorescent Antibody TechniqueHistone Deacetylase InhibitorsHumansHydroxamic AcidsAntigens, NuclearBloom syndrome proteinDNA-Binding ProteinsHistone Deacetylase InhibitorsHydroxamic AcidsKu AutoantigenLuciferasesRAD51 protein, humanRad51 RecombinaseRecQ HelicasesRNA, Small Interferingtrichostatin AVorinostatXrcc6 protein, human

Identifiers

PMID24466340
PMCPMC3900704
OpenAlexW2072928965

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.