Evidence map›Paper›PMID 24466270›Full record

ArticlePloS one2014

Ubiquitin-related modifiers of Arabidopsis thaliana influence root development.

Florian John, Matthias Philipp, Ruth-Maria Leiber, Sanae Errafi, Christoph Ringli

Abstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Florian JohnInstitute of Plant Biology, University of Zürich, Zürich, Switzerland.
Matthias PhilippInstitute of Plant Biology, University of Zürich, Zürich, Switzerland.
Ruth-Maria LeiberInstitute of Plant Biology, University of Zürich, Zürich, Switzerland.
Sanae ErrafiInstitute of Plant Biology, University of Zürich, Zürich, Switzerland.
Christoph RingliInstitute of Plant Biology, University of Zürich, Zürich, Switzerland.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ubiquitins are small peptides that allow for posttranslational modification of proteins. Ubiquitin-related modifier (URM) proteins belong to the class of ubiquitin-like proteins. A primary function of URM proteins has been shown to be the sulfur transfer reaction leading to thiolation of tRNAs, a process that is important for accurate and effective protein translation. Recent analyses revealed that the Arabidopsis genome codes for two URM proteins, URM11 and URM12, which both are active in the tRNA thiolation process. Here, we show that URM11 and URM12 have overlapping expression patterns and are required for tRNA thiolation. The characterization of urm11 and urm12 mutants reveals that the lack of tRNA thiolation induces changes in general root architecture by influencing the rate of lateral root formation. In addition, they synergistically influence root hair cell growth. During the sulfur transfer reaction, URM proteins of different organisms interact with a thiouridylase, a protein-protein interaction that also takes place in Arabidopsis, since URM11 and URM12 interact with the Arabidopsis thiouridylase ROL5. Hence, the sulfur transfer reaction is conserved between distantly related species such as yeast, humans, and plants, and in Arabidopsis has an impact on root development.

Indexed as

ArabidopsisArabidopsis ProteinsDNA, ComplementaryGene Expression ProfilingMicroscopy, FluorescencePlant RootsReverse Transcriptase Polymerase Chain ReactionRNA, TransferSmall Ubiquitin-Related Modifier ProteinsSulfur CompoundsSulfurtransferasesTwo-Hybrid System TechniquesArabidopsis ProteinsDNA, ComplementaryRNA, TransferSmall Ubiquitin-Related Modifier ProteinsSulfur CompoundsSulfurtransferasesthiouridine-tRNA sulfurtransferaseURM11 protein, ArabidopsisURM12 protein, Arabidopsis

Identifiers

PMID24466270
PMCPMC3899330

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.