Evidence map›Paper›PMID 24466213›Full record

ArticlePloS one2014

CRP-cyclic AMP dependent inhibition of the xylene-responsive σ(54)-promoter Pu in Escherichia coli.

Yuan-Tao Zhang, Feng Jiang, Zhe-Xian Tian, Yi-Xin Huo, Yi-Cheng Sun, Yi-Ping Wang

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.7field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Yuan-Tao ZhangState Key Laboratory of Protein and Plant Gene Research, College of Life Sciences, Peking University, Beijing, China.
Feng JiangState Key Laboratory of Protein and Plant Gene Research, College of Life Sciences, Peking University, Beijing, China ; Institute of Pathogen Biology, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China.
Zhe-Xian TianState Key Laboratory of Protein and Plant Gene Research, College of Life Sciences, Peking University, Beijing, China.
Yi-Xin HuoState Key Laboratory of Protein and Plant Gene Research, College of Life Sciences, Peking University, Beijing, China.
Yi-Cheng SunState Key Laboratory of Protein and Plant Gene Research, College of Life Sciences, Peking University, Beijing, China ; Institute of Pathogen Biology, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, China.
Yi-Ping WangState Key Laboratory of Protein and Plant Gene Research, College of Life Sciences, Peking University, Beijing, China.
Peking University · CNChinese Academy of Medical Sciences & Peking Union Medical College · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The expression of σ(54)-dependent Pseudomonas putida Pu promoter is activated by XylR activator when cells are exposed to a variety of aromatic inducers. In this study, the transcriptional activation of the P. putida Pu promoter was recreated in the heterologous host Escherichia coli. Here we show that the cAMP receptor protein (CRP), a well-known carbon utilization regulator, had an inhibitory effect on the expression of Pu promoter in a cAMP-dependent manner. The inhibitory effect was not activator specific. In vivo KMnO4 and DMS footprinting analysis indicated that CRP-cAMP poised the RNA polymerase at Pu promoter, inhibiting the isomerization step of the transcription initiation even in the presence of an activator. Therefore, the presence of PTS-sugar, which eliminates cAMP, could activate the poised RNA polymerase at Pu promoter to transcribe. Moreover, the activation region 1 (AR1) of CRP, which interacts directly with the αCTD (C-terminal domain of α-subunit) of RNA polymerase, was found essential for the CRP-mediated inhibition at Pu promoter. A model for the above observations is discussed.

Indexed as

Cyclic AMPCyclic AMP Receptor ProteinDNA FootprintingEscherichia coliGene Expression Regulation, BacterialPromoter Regions, GeneticPseudomonas putidaRNA Polymerase Sigma 54Transcription, GeneticXylenesCyclic AMPCyclic AMP Receptor ProteinRNA Polymerase Sigma 54Xylenes

Identifiers

PMID24466213
PMCPMC3900584
OpenAlexW2001709852

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.