ArticlePloS one2014
Tomato genomic resources database: an integrated repository of useful tomato genomic information for basic and applied research.
Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
21 citing papers in PubMed, 53 citations in OpenAlex.
- A novel tomato interspecific (Horticulture research · 2024Article
- Amaranth Genomic Resource Database: an integrated database resource of Amaranth genes and genomics.Frontiers in plant science · 2023Article
- Response of irrigated tomato (Heliyon · 2022Article
- Transcriptome Reprogramming of Tomato Orchestrate the Hormone Signaling Network of Systemic Resistance Induced byFrontiers in plant science · 2021Article
- Article
- Article
- Review
- A genomic resource derived from the integration of genome sequences, expressed transcripts and genetic markers in ramie.BMC genomics · 2019Article
- Tomato Fruit Development and Metabolism.Frontiers in plant science · 2019Review
- Can the world's favorite fruit, tomato, provide an effective biosynthetic chassis for high-value metabolites?Plant cell reports · 2018Review
- Genome-wide analysis and expression profiling of zinc finger homeodomain (ZHD) family genes reveal likely roles in organ development and stress responses in tomato.BMC genomics · 2017Article
- Genetic Architecture and Molecular Networks Underlying Leaf Thickness in Desert-Adapted TomatoPlant physiology · 2017Article
- In Silico identification of SNP diversity in cultivated and wild tomato species: insight from molecular simulations.Scientific reports · 2016Article
- Exploiting Genomics Resources to Identify Candidate Genes Underlying Antioxidants Content in Tomato Fruit.Frontiers in plant science · 2016Article
- Transcriptomic Changes Drive Physiological Responses to Progressive Drought Stress and Rehydration in Tomato.Frontiers in plant science · 2016Article
- Evolutionarily Dynamic, but Robust, Targeting of Resistance Genes by the miR482/2118 Gene Family in the Solanaceae.Genome biology and evolution · 2015Article
- Identification of key genes involved in root development of tomato using expressed sequence tag analysis.Physiology and molecular biology of plants : an international journal of functional plant biology · 2015Article
- Identification of novel small ncRNAs in pollen of tomato.BMC genomics · 2015Article
- Article
- NexGenEx-Tom: a gene expression platform to investigate the functionalities of the tomato genome.BMC plant biology · 2015Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
5 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Tomato Genomic Resources Database (TGRD) allows interactive browsing of tomato genes, micro RNAs, simple sequence repeats (SSRs), important quantitative trait loci and Tomato-EXPEN 2000 genetic map altogether or separately along twelve chromosomes of tomato in a single window. The database is created using sequence of the cultivar Heinz 1706. High quality single nucleotide polymorphic (SNP) sites between the genes of Heinz 1706 and the wild tomato S. pimpinellifolium LA1589 are also included. Genes are classified into different families. 5'-upstream sequences (5'-US) of all the genes and their tissue-specific expression profiles are provided. Sequences of the microRNA loci and their putative target genes are catalogued. Genes and 5'-US show presence of SSRs and SNPs. SSRs located in the genomic, genic and 5'-US can be analysed separately for the presence of any particular motif. Primer sequences for all the SSRs and flanking sequences for all the genic SNPs have been provided. TGRD is a user-friendly web-accessible relational database and uses CMAP viewer for graphical scanning of all the features. Integration and graphical presentation of important genomic information will facilitate better and easier use of tomato genome. TGRD can be accessed as an open source repository at http://59.163.192.91/tomato2/.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.