Evidence map›Paper›PMID 24465722›Full record

ArticlePloS one2014

Evolutionary and biotechnological implications of robust hydrogenase activity in halophilic strains of Tetraselmis.

Sarah D'Adamo, Robert E Jinkerson, Eric S Boyd, Susan L Brown, Bonnie K Baxter, John W Peters, Matthew C Posewitz

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 29 citations in OpenAlex.

  1. Review
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  3. Great Salt Lake microbiology: a historical perspective.International microbiology : the official journal of the Spanish Society for Microbiology · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Sarah D'AdamoDepartment of Chemistry and Geochemistry, Colorado School of Mines, Golden, Colorado, United States of America.
Robert E JinkersonDepartment of Chemistry and Geochemistry, Colorado School of Mines, Golden, Colorado, United States of America.
Eric S BoydDepartment of Microbiology and the Thermal Biology Institute, Montana State University, Bozeman, Montana, United States of America.
Susan L BrownCenter for Marine Microbial Ecology and Diversity, University of Hawaii, Honolulu, Hawaii, United States of America.
Bonnie K BaxterDepartment of Biology and the Great Salt Lake Institute, Westminster College, Salt Lake City, Utah, United States of America.
John W PetersDepartment of Microbiology and the Thermal Biology Institute, Montana State University, Bozeman, Montana, United States of America ; Department of Chemistry and Biochemistry, Montana State University, Bozeman, Montana, United States of America.
Matthew C PosewitzDepartment of Chemistry and Geochemistry, Colorado School of Mines, Golden, Colorado, United States of America.
Colorado School of Mines · USMontana State University · USUniversity of Hawaii System · USWestminster University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Although significant advances in H2 photoproduction have recently been realized in fresh water algae (e.g. Chlamydomonas reinhardtii), relatively few studies have focused on H2 production and hydrogenase adaptations in marine or halophilic algae. Salt water organisms likely offer several advantages for biotechnological H2 production due to the global abundance of salt water, decreased H2 and O2 solubility in saline and hypersaline systems, and the ability of extracellular NaCl levels to influence metabolism. We screened unialgal isolates obtained from hypersaline ecosystems in the southwest United States and identified two distinct halophilic strains of the genus Tetraselmis (GSL1 and QNM1) that exhibit both robust fermentative and photo H2-production activities. The influence of salinity (3.5%, 5.5% and 7.0% w/v NaCl) on H2 production was examined during anoxic acclimation, with the greatest in vivo H2-production rates observed at 7.0% NaCl. These Tetraselmis strains maintain robust hydrogenase activity even after 24 h of anoxic acclimation and show increased hydrogenase activity relative to C. reinhardtii after extended anoxia. Transcriptional analysis of Tetraselmis GSL1 enabled sequencing of the cDNA encoding the FeFe-hydrogenase structural enzyme (HYDA) and its maturation proteins (HYDE, HYDEF and HYDG). In contrast to freshwater Chlorophyceae, the halophilic Tetraselmis GSL1 strain likely encodes a single HYDA and two copies of HYDE, one of which is fused to HYDF. Phylogenetic analyses of HYDA and concatenated HYDA, HYDE, HYDF and HYDG in Tetraselmis GSL1 fill existing knowledge gaps in the evolution of algal hydrogenases and indicate that the algal hydrogenases sequenced to date are derived from a common ancestor. This is consistent with recent hypotheses that suggest fermentative metabolism in the majority of eukaryotes is derived from a common base set of enzymes that emerged early in eukaryotic evolution with subsequent losses in some organisms.

Indexed as

BiotechnologyEvolution, MolecularSalinityAcclimatizationCarbohydrate MetabolismCarbon DioxideCell CountChlorophytaFermentationGene Expression Regulation, EnzymologicHydrogenHydrogenaseLightLikelihood FunctionsMetabolomeMolecular Sequence DataCarbon DioxideHydrogenHydrogenaseParaquatRNA, Messenger

Identifiers

PMID24465722
PMCPMC3897525
OpenAlexW2028600935

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.