Evidence map›Paper›PMID 24465625›Full record

ArticlePloS one2014

Bacillus pumilus reveals a remarkably high resistance to hydrogen peroxide provoked oxidative stress.

Stefan Handtke, Rebecca Schroeter, Britta Jürgen, Karen Methling, Rabea Schlüter, Dirk Albrecht, Sacha A F T van Hijum, Johannes Bongaerts, Karl-Heinz Maurer, Michael Lalk and 3 more

Expression of concernOpen access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It carries an expression of concern. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
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  4. Genes · 2022
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  6. SigB-regulated antioxidant functions in gram-positive bacteria.World journal of microbiology & biotechnology · 2021
    Review
  7. Article
  8. Frontiers in microbiology · 2019
    Article
  9. Article
  10. Article
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  12. Article
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  14. Review
  15. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 2 countries.

Stefan HandtkeInstitute for Microbiology, University of Greifswald, Greifswald, Germany.
Rebecca SchroeterPharmaceutical Biotechnology, Institute of Pharmacy, University of Greifswald, Greifswald, Germany.
Britta JürgenPharmaceutical Biotechnology, Institute of Pharmacy, University of Greifswald, Greifswald, Germany.
Karen MethlingInstitute of Biochemistry, University of Greifswald, Greifswald, Germany.
Rabea SchlüterInstitute for Microbiology, University of Greifswald, Greifswald, Germany.
Dirk AlbrechtInstitute for Microbiology, University of Greifswald, Greifswald, Germany.
Sacha A F T van HijumCentre for Molecular and Biomolecular Informatics (CMBI), Nijmegen Centre for Molecular Life Sciences, Radboud University Medical Center, Nijmegen, The Netherlands; and Division Processing and Safety, NIZO Food Research B.V., Ede, The Netherlands.
Johannes BongaertsDepartment of Chemistry and Biotechnology, Aachen University of Applied Sciences, Jülich, Germany.
Karl-Heinz MaurerAB Enzymes GmbH, Darmstadt, Germany.
Michael LalkInstitute of Biochemistry, University of Greifswald, Greifswald, Germany.
Thomas SchwederPharmaceutical Biotechnology, Institute of Pharmacy, University of Greifswald, Greifswald, Germany ; Institute of Marine Biotechnology, Greifswald, Germany.
Michael HeckerInstitute for Microbiology, University of Greifswald, Greifswald, Germany ; Institute of Marine Biotechnology, Greifswald, Germany.
Birgit VoigtInstitute for Microbiology, University of Greifswald, Greifswald, Germany ; Institute of Marine Biotechnology, Greifswald, Germany.
Universität Greifswald · DEABEnzymes (Germany) · DEFH Aachen · DEInstitute of Marine Biotechnology · DERadboud University Nijmegen · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacillus pumilus is characterized by a higher oxidative stress resistance than other comparable industrially relevant Bacilli such as B. subtilis or B. licheniformis. In this study the response of B. pumilus to oxidative stress was investigated during a treatment with high concentrations of hydrogen peroxide at the proteome, transcriptome and metabolome level. Genes/proteins belonging to regulons, which are known to have important functions in the oxidative stress response of other organisms, were found to be upregulated, such as the Fur, Spx, SOS or CtsR regulon. Strikingly, parts of the fundamental PerR regulon responding to peroxide stress in B. subtilis are not encoded in the B. pumilus genome. Thus, B. pumilus misses the catalase KatA, the DNA-protection protein MrgA or the alkyl hydroperoxide reductase AhpCF. Data of this study suggests that the catalase KatX2 takes over the function of the missing KatA in the oxidative stress response of B. pumilus. The genome-wide expression analysis revealed an induction of bacillithiol (Cys-GlcN-malate, BSH) relevant genes. An analysis of the intracellular metabolites detected high intracellular levels of this protective metabolite, which indicates the importance of bacillithiol in the peroxide stress resistance of B. pumilus.

Indexed as

BacillusBacterial ProteinsGene Expression Regulation, BacterialHydrogen PeroxideOxidative StressRegulonRepressor ProteinsBacterial ProteinsHydrogen PeroxideRepressor Proteins

Identifiers

PMID24465625
PMCPMC3896406
OpenAlexW1994257553

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.