Evidence map›Paper›PMID 24465541›Full record

ArticlePloS one2014

Identification of a new epitope in uPAR as a target for the cancer therapeutic monoclonal antibody ATN-658, a structural homolog of the uPAR binding integrin CD11b (αM).

Xiang Xu, Yuan Cai, Ying Wei, Fernando Donate, Jose Juarez, Graham Parry, Liqing Chen, Edward J Meehan, Richard W Ahn, Andrey Ugolkov and 4 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.9field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Review
  5. uPAR Immuno-PET in Pancreatic Cancer, Aging, and Chemotherapy-Induced Senescence.Journal of nuclear medicine : official publication, Society of Nuclear Medicine · 2024
    Article
  6. Article
  7. suPAR: An Inflammatory Mediator for Kidneys.Kidney diseases (Basel, Switzerland) · 2022
    Review
  8. Article
  9. Review
  10. Article
  11. Review
  12. Review
  13. Article
  14. Structural Biology and Protein Engineering of Thrombolytics.Computational and structural biotechnology journal · 2019
    Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

14 authors at 6 institutions in 2 countries.

Xiang XuDivision of Hemostasis and Thrombosis, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, Massachusetts, United States of America.
Yuan CaiDivision of Hemostasis and Thrombosis, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, Massachusetts, United States of America ; State Key Laboratory of Structural Chemistry, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Sciences, Fuzhou, Fujian, China.
Ying WeiDepartment of Medicine, University of California San Francisco, San Francisco, California, United States of America.
Fernando DonateAgensys, St. Santa Monica, California, United States of America.
Jose JuarezGNF, San Diego, California, United States of America.
Graham ParryAttenuon, San Diego, California, United States of America.
Liqing ChenDepartment of Chemistry, University of Alabama in Huntsville, Huntsville, Alabama, United States of America.
Edward J MeehanDepartment of Chemistry, University of Alabama in Huntsville, Huntsville, Alabama, United States of America.
Richard W AhnDepartment of Chemistry, Northwestern University, Evanston, Illinois, United States of America.
Andrey UgolkovChemistry of Life Processes Institute, Northwestern University, Evanston, Illinois, United States of America.
Oleksii DubrovskyiChemistry of Life Processes Institute, Northwestern University, Evanston, Illinois, United States of America.
Thomas V O'HalloranChemistry of Life Processes Institute, Northwestern University, Evanston, Illinois, United States of America ; Robert H. Lurie Comprehensive Cancer Center, Northwestern University, Evanston, Illinois, United States of America ; Department of Molecular Biosciences, Northwestern University, Evanston, Illinois, United States of America ; Department of Chemistry, Northwestern University, Evanston, Illinois, United States of America.
Mingdong HuangDivision of Hemostasis and Thrombosis, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, Massachusetts, United States of America.
Andrew P MazarChemistry of Life Processes Institute, Northwestern University, Evanston, Illinois, United States of America ; Robert H. Lurie Comprehensive Cancer Center, Northwestern University, Evanston, Illinois, United States of America ; Department of Molecular Biosciences, Northwestern University, Evanston, Illinois, United States of America.
Northwestern University · USBeth Israel Deaconess Medical Center · USUniversity of Alabama in Huntsville · USFujian Institute of Research on the Structure of Matter · CNGenomics Institute of the Novartis Research Foundation · USUniversity of California, San Francisco · US

Funding

Tumor Environment and Metastasis (TEAM) Research ProgramP30CA060553 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Daniela E Matei · 1993 to 2026
$153.9M
Life Science and Biomedical technology Research center at NSLS-II LSBRP41GM111244 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI MCSWEENEY, SEAN · 2014 to 2018
$16.4M
Tumor Targeted Nanobins for the Treatment of Metastatic Breast and Ovarian CancerU01CA151461 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI O'HALLORAN, THOMAS V · 2010 to 2014
$2.2M
Structural aspects of urokinase receptor in vascular biologyR01HL086584 · NHLBI · BETH ISRAEL DEACONESS MEDICAL CENTER · PI HUANG, MINGDONG · 2007 to 2011
$1.9M
Urokinase Receptor Integrin Interactions in Lung CancerR01CA125564 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CHAPMAN, HAROLD A · 2007 to 2011
$1.5M
NEURAL &PHARMACOLOGICAL CONTROL OF AIRWAY SMOOTH MUSCLEF32HL008658 · NHLBI · UNIVERSITY OF CHICAGO · PI NDUKWU, IKEADI M · 1992 to 1994
–
NCI NIH HHS CA125564NCI NIH HHS CA151461NCI NIH HHS P30 CA060553NCI NIH HHS R01 CA125564NCI NIH HHS U01 CA151461NHLBI NIH HHS HL08658NHLBI NIH HHS R01 HL086584NIGMS NIH HHS P41 GM111244
6 · The paper itself

Abstract

The urokinase plasminogen activator receptor (uPAR) plays a role in tumor progression and has been proposed as a target for the treatment of cancer. We recently described the development of a novel humanized monoclonal antibody that targets uPAR and has anti-tumor activity in multiple xenograft animal tumor models. This antibody, ATN-658, does not inhibit ligand binding (i.e. uPA and vitronectin) to uPAR and its mechanism of action remains unclear. As a first step in understanding the anti-tumor activity of ATN-658, we set out to identify the epitope on uPAR to which ATN-658 binds. Guided by comparisons between primate and human uPAR, epitope mapping studies were performed using several orthogonal techniques. Systematic site directed and alanine scanning mutagenesis identified the region of aa 268-275 of uPAR as the epitope for ATN-658. No known function has previously been attributed to this epitope Structural insights into epitope recognition were obtained from structural studies of the Fab fragment of ATN-658 bound to uPAR. The structure shows that the ATN-658 binds to the DIII domain of uPAR, close to the C-terminus of the receptor, corroborating the epitope mapping results. Intriguingly, when bound to uPAR, the complementarity determining region (CDR) regions of ATN-658 closely mimic the binding regions of the integrin CD11b (αM), a previously identified uPAR ligand thought to be involved in leukocyte rolling, migration and complement fixation with no known role in tumor progression of solid tumors. These studies reveal a new functional epitope on uPAR involved in tumor progression and demonstrate a previously unrecognized strategy for the therapeutic targeting of uPAR.

Indexed as

Amino Acid SequenceAnimalsAntibodies, MonoclonalCD11b AntigenCell Line, TumorChlorocebus aethiopsDogsDrosophila melanogasterEpitope MappingEpitopesHumansMiceModels, MolecularMolecular Sequence DataMutagenesis, Site-DirectedProtein BindingAntibodies, MonoclonalATN-658CD11b AntigenEpitopesITGAM protein, humanPLAUR protein, humanReceptors, Urokinase Plasminogen ActivatorRecombinant ProteinsUrokinase-Type Plasminogen ActivatorVitronectin

Identifiers

PMID24465541
PMCPMC3897428
OpenAlexW1991918849

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.