Evidence map›Paper›PMID 24465507›Full record

ArticlePloS one2014

Cell morphogenesis proteins are translationally controlled through UTRs by the Ndr/LATS target Ssd1.

Antony G Wanless, Yuan Lin, Eric L Weiss

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 41 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Antony G WanlessDepartment of Molecular Biosciences, Northwestern University, Evanston, Illinois, United States of America.
Yuan LinDepartment of Molecular Biosciences, Northwestern University, Evanston, Illinois, United States of America.
Eric L WeissDepartment of Molecular Biosciences, Northwestern University, Evanston, Illinois, United States of America.
Northwestern University · US

Funding

Control and function of the yeast RAM networkR01GM084223 · NIGMS · NORTHWESTERN UNIVERSITY · PI WEISS, ERIC LYLE · 2008 to 2017
$2.9M
NIGMS NIH HHS R01 GM084223
6 · The paper itself

Abstract

Eukaryotic cells control their growth and morphogenesis to maintain integrity and viability. Free-living cells are further challenged by their direct interaction with the environment and in many cases maintain a resilient cell wall to stay alive under widely varying conditions. For these organisms, stringent and highly localized control of the cell wall's remodeling and expansion is crucial for cell growth and reproduction. In the budding yeast Saccharomyces cerevisiae the RNA binding protein Ssd1 helps control cell wall remodeling by repressing translation of proteins involved in wall expansion. Ssd1 is itself negatively regulated by the highly conserved Ndr/LATS protein kinase Cbk1. We sought to identify mRNA regions that confer Ssd1-mediated translational control. After validating a GFP reporter system as a readout of Ssd1 activity we found that 3' untranslated regions of the known Ssd1 targets CTS1, SIM1 and UTH1 are sufficient for Cbk1-regulated translational control. The 5' untranslated region of UTH1 also facilitated Ssd1-mediated translational control in a heterologous context. The CTS1 and SIM1 3' untranslated regions confer Ssd1 binding, and the SIM1 3' untranslated region improves Ssd1 immunoprecipitation of the endogenous SIM1 transcript. However, SIM1's 3' untranslated region is not essential for Ssd1-regulated control of the message's translation. We propose that Ssd1 regulates translation of its target message primarily through UTRs and the SIM1 message through multiple potential points of interaction, permitting fine translational control in various contexts.

Indexed as

Gene Expression Regulation, FungalProtein Biosynthesis3' Untranslated Regions5' Untranslated RegionsBasic Helix-Loop-Helix ProteinsCell WallChitinasesGenes, ReporterGreen Fluorescent ProteinsHeat-Shock ProteinsIntracellular Signaling Peptides and ProteinsMembrane ProteinsMitochondrial ProteinsMorphogenesisProtein Serine-Threonine KinasesRepressor Proteins3' Untranslated Regions5' Untranslated RegionsBasic Helix-Loop-Helix ProteinsCBK1 protein, S cerevisiaeChitinasesCTS1 protein, S cerevisiaeGreen Fluorescent ProteinsHeat-Shock ProteinsIntracellular Signaling Peptides and ProteinsMembrane ProteinsMitochondrial ProteinsProtein Serine-Threonine KinasesRepressor ProteinsSaccharomyces cerevisiae ProteinsSIM1 protein, S cerevisiaeSsd1 protein, S cerevisiaeUTH1 protein, S cerevisiae

Identifiers

PMID24465507
PMCPMC3897418
OpenAlexW2019003977

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.