Evidence map›Paper›PMID 24465395›Full record

ArticlePloS one2014

Epigenetic reprogramming in Mist1(-/-) mice predicts the molecular response to cerulein-induced pancreatitis.

Rashid Mehmood, Gabor Varga, Sonali Q Mohanty, Scott W Laing, Yuefeng Lu, Charis L Johnson, Alexei Kharitonenkov, Christopher L Pin

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Rashid MehmoodChildren's Health Research Institute, London, Ontario, Canada ; Children's Health Research Institute, Department of Paediatrics, London, Ontario, Canada.
Gabor VargaLilly Research Laboratories, Eli Lilly and Company, Indianapolis, Indiana, United States of America.
Sonali Q MohantyLilly Research Laboratories, Eli Lilly and Company, Indianapolis, Indiana, United States of America.
Scott W LaingChildren's Health Research Institute, London, Ontario, Canada ; Children's Health Research Institute, Department of Paediatrics, London, Ontario, Canada ; Children's Health Research Institute, Department of Physiology & Pharmacology, London, Ontario, Canada.
Yuefeng LuBiostatistics and Programming, Sanofi US, Framingham, Massachusetts, United States of America.
Charis L JohnsonChildren's Health Research Institute, London, Ontario, Canada ; Children's Health Research Institute, Department of Paediatrics, London, Ontario, Canada.
Alexei KharitonenkovLilly Research Laboratories, Eli Lilly and Company, Indianapolis, Indiana, United States of America.
Christopher L PinChildren's Health Research Institute, London, Ontario, Canada ; Children's Health Research Institute, Department of Paediatrics, London, Ontario, Canada ; Children's Health Research Institute, Department of Physiology & Pharmacology, London, Ontario, Canada ; Oncology, the University of Western Ontario, London, Ontario, Canada.
Children’s Health Research Institute · CAEli Lilly (United States) · USSanofi (United States) · US

Funding

Canadian Institutes of Health Research MOE 58083
6 · The paper itself

Abstract

Gene expression is affected by modifications to histone core proteins within chromatin. Changes in these modifications, or epigenetic reprogramming, can dictate cell fate and promote susceptibility to disease. The goal of this study was to determine the extent of epigenetic reprogramming in response to chronic stress that occurs following ablation of MIST1 (Mist1(-/-) ), which is repressed in pancreatic disease. Chromatin immunoprecipitation for trimethylation of lysine residue 4 on histone 3 (H3K4Me3) in purified acinar cells from wild type and Mist1(-/-) mice was followed by Next Generation sequencing (ChIP-seq) or ChIP-qPCR. H3K4Me3-enriched genes were assessed for expression by qRT-PCR in pancreatic tissue before and after induction of cerulein-induced pancreatitis. While most of H3K4Me3-enrichment is restricted to transcriptional start sites, >25% of enrichment sites are found within, downstream or between annotated genes. Less than 10% of these sites were altered in Mist1(-/-) acini, with most changes in H3K4Me3 enrichment not reflecting altered gene expression. Ingenuity Pathway Analysis of genes differentially-enriched for H3K4Me3 revealed an association with pancreatitis and pancreatic ductal adenocarcinoma in Mist1(-/-) tissue. Most of these genes were not differentially expressed but several were readily induced by acute experimental pancreatitis, with significantly increased expression in Mist1(-/-) tissue relative to wild type mice. We suggest that the chronic cell stress observed in the absence of MIST1 results in epigenetic reprogramming of genes involved in promoting pancreatitis to a poised state, thereby increasing the sensitivity to events that promote disease.

Indexed as

Epigenesis, GeneticAcinar CellsAnimalsBasic Helix-Loop-Helix ProteinsCarcinoma, Pancreatic DuctalCeruletideChromatinHistonesMaleMetabolic Networks and PathwaysMethylationMiceMice, KnockoutPancreasPancreatic NeoplasmsPancreatitisBasic Helix-Loop-Helix ProteinsBhlha15 protein, mouseCeruletideChromatinHistones

Identifiers

PMID24465395
PMCPMC3897368
OpenAlexW2087517030

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.