Evidence map›Paper›PMID 24465162›Full record

ArticleInternational journal of medical sciences2014

Aberrant DNA methylation of G-protein-coupled bile acid receptor Gpbar1 (TGR5) is a potential biomarker for hepatitis B Virus associated hepatocellular carcinoma.

Li-Yan Han, Yu-Chen Fan, Nan-Nan Mu, Shuai Gao, Feng Li, Xiang-Fen Ji, Cheng-Yun Dou, Kai Wang

Open access · goldAbstract read
In one paragraph

Article in International journal of medical sciences, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers, 5 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed, 5 pooled it
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 5 syntheses or guidelines pooled it, 71 citations in OpenAlex.

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  3. Utility of Liquid Biopsy Analysis in Detection of Hepatocellular Carcinoma, Determination of Prognosis, and Disease Monitoring: A Systematic Review.Clinical gastroenterology and hepatology : the official clinical practice journal of the American Gastroenterological Association · 2020
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  19. Is Cell-Free DNA Testing in Hepatocellular Carcinoma Ready for Prime Time?International journal of molecular sciences · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Li-Yan Han1. Department of Hepatology, Qilu Hospital of Shandong University, Jinan 250012, China ; 2. Institute of Hepatology, Shandong University, Jinan 250012, China.
Yu-Chen Fan1. Department of Hepatology, Qilu Hospital of Shandong University, Jinan 250012, China ; 2. Institute of Hepatology, Shandong University, Jinan 250012, China.
Nan-Nan Mu3. Department of Ultrasound, the General Hospital Jinan Military Region, Jinan 250031, China.
Shuai Gao1. Department of Hepatology, Qilu Hospital of Shandong University, Jinan 250012, China.
Feng Li1. Department of Hepatology, Qilu Hospital of Shandong University, Jinan 250012, China.
Xiang-Fen Ji1. Department of Hepatology, Qilu Hospital of Shandong University, Jinan 250012, China.
Cheng-Yun Dou1. Department of Hepatology, Qilu Hospital of Shandong University, Jinan 250012, China.
Kai Wang1. Department of Hepatology, Qilu Hospital of Shandong University, Jinan 250012, China ; 2. Institute of Hepatology, Shandong University, Jinan 250012, China.
Qilu Hospital of Shandong University · CNJinan Military General Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundG-protein-coupled bile acid receptor Gpbar1 (TGR5) is a newly identified liver tumor suppressor in carcinogenesis. This present study was therefore to determine the potential value of serum TGR5 promoter methylation in identifying hepatocellular carcinoma (HCC) from chronic hepatitis B (CHB) patients.

methodsThe circulating cell-free DNA (cfDNA) was extracted from a retrospective dataset including 160 HCC, 88 CHB and 45 healthy controls (HCs). Methylation status of TGR5 promoter was examined by methylation-specific polymerase chain reaction (MSP).

resultsHypermethylation of the TGR5 promoter occurred significantly more frequent in HCC (77/160, 48.13%) than CHB (12/88, 13.64%; p<0.01) and HCs (2/45, 4.44%; p<0.01). The methylation rate of TGR5 in HCC patients ≥60 years old was significantly higher than those <60 years old (p<0.05). Alpha fetoprotein (AFP) had sensitivity of 58.13%, 30.63% and 24.38% at cut-off points of 20, 200 and 400ng/ml respectively; while TGR5 methylation combined AFP had sensitivity of 81.25%, 68.13% and 65%. AFP had specificity of 47.73%, 92.05% and 98.86% at cut-off points of 20, 200 and 400ng/ml respectively; while TGR5 methylation combined AFP had specificity of 38.64%, 78.41% and 85.23%. AFP had Youden index of 0.06, 0.23 and 0.23 at cut-off points of 20, 200 and 400ng/ml respectively; while TGR5 methylation combined AFP had Youden index of 0.20, 0.47 and 0.50.

conclusionsOur findings strongly suggested the combination of serum TGR5 promoter methylation and AFP enhanced the diagnostic value of AFP alone in discriminating HCC from CHB patients.

Indexed as

alpha-FetoproteinsBiomarkers, TumorCarcinoma, HepatocellularDNA MethylationFemaleHepatitis B, ChronicHepatitis B virusHumansLiver NeoplasmsMaleMiddle AgedPromoter Regions, GeneticReceptors, G-Protein-Coupledalpha-FetoproteinsBiomarkers, TumorGPBAR1 protein, humanReceptors, G-Protein-CoupledDNA methylationHepatocellular carcinomaMSPserumTGR5

Identifiers

PMID24465162
PMCPMC3894401
OpenAlexW2048014608

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.