Evidence map›Paper›PMID 24464295›Full record

ArticleThe Plant cell2014

Arabidopsis KANADI1 acts as a transcriptional repressor by interacting with a specific cis-element and regulates auxin biosynthesis, transport, and signaling in opposition to HD-ZIPIII factors.

Tengbo Huang, Yaël Harrar, Changfa Lin, Brenda Reinhart, Nicole R Newell, Franklin Talavera-Rauh, Samuel A Hokin, M Kathryn Barton, Randall A Kerstetter

Open access · bronzeAbstract read
In one paragraph

Article in The Plant cell, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 78 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
78citing papers in PubMed, 1 pooled it
15.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

78 citing papers in PubMed, 1 synthesis or guideline pooled it, 117 citations in OpenAlex.

  1. Pooled it
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  15. Fine Mapping of a Pleiotropic Locus (International journal of molecular sciences · 2023
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  18. Genome-Scale Investigation ofInternational journal of molecular sciences · 2022
    Article
  19. Article
  20. Plants (Basel, Switzerland) · 2022
    Article

18 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Tengbo HuangDepartment of Plant Biology and Pathology, Waksman Institute, Rutgers, The State University of New Jersey, Piscataway, New Jersey 08854.
Yaël Harrar
Changfa Lin
Brenda Reinhart
Nicole R Newell
Franklin Talavera-Rauh
Samuel A Hokin
M Kathryn Barton
Randall A Kerstetter
Carnegie Institution for Science · USRutgers, The State University of New Jersey · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The formation of leaves and other lateral organs in plants depends on the proper specification of adaxial-abaxial (upper-lower) polarity. KANADI1 (KAN1), a member of the GARP family of transcription factors, is a key regulator of abaxial identity, leaf growth, and meristem formation in Arabidopsis thaliana. Here, we demonstrate that the Myb-like domain in KAN1 binds the 6-bp motif GNATA(A/T) and that this motif alone is sufficient to squelch transcription of a linked reporter in vivo. In addition, we report that KAN1 acts as a transcriptional repressor. Among its targets are genes involved in auxin biosynthesis, auxin transport, and auxin response. Furthermore, we find that the adaxializing HD-ZIPIII transcription factor REVOLUTA has opposing effects on multiple components of the auxin pathway. We hypothesize that HD-ZIPIII and KANADI transcription factors pattern auxin accumulation and responsiveness in the embryo. Specifically, we propose the opposing actions of KANADI and HD-ZIPIII factors on cotyledon formation (KANADI represses and HD-ZIPIII promotes cotyledon formation) occur through their opposing actions on genes acting at multiple steps in the auxin pathway.

Indexed as

ArabidopsisArabidopsis ProteinsBiological TransportGene Expression Regulation, PlantGene Regulatory NetworksHomeodomain ProteinsIndoleacetic AcidsRepressor ProteinsSignal TransductionTranscription FactorsArabidopsis ProteinsHD-Zip protein, ArabidopsisHomeodomain ProteinsIndoleacetic AcidsKANADI protein, ArabidopsisRepressor ProteinsTranscription Factors

Identifiers

PMID24464295
PMCPMC3963573
OpenAlexW2170093434

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.