Evidence map›Paper›PMID 24464289›Full record

ArticleExtremophiles : life under extreme conditions2014

Cloning, expression and characterization of a novel cold-active and halophilic xylanase from Zunongwangia profunda.

Xiaoshuang Liu, Zongqing Huang, Xiangnan Zhang, Zongze Shao, Ziduo Liu

Abstract read
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In one paragraph

Article in Extremophiles : life under extreme conditions, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
5.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 65 citations in OpenAlex.

  1. Article
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  4. Article
  5. Review
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  7. Review
  8. Xylanase from Marine Filamentous FungusJournal of applied glycoscience · 2021
    Article
  9. Article
  10. Review
  11. Article
  12. Characterizing a Halo-Tolerant GH10 Xylanase fromInternational journal of molecular sciences · 2019
    Article
  13. Characterization of a novel cold-active xylanase from Luteimonas species.World journal of microbiology & biotechnology · 2018
    Article
  14. Article
  15. Review
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Xiaoshuang LiuState Key Laboratory of Agricultural Microbiology, College of Life Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China.
Zongqing Huang
Xiangnan Zhang
Zongze Shao
Ziduo Liu
Huazhong Agricultural University · CNNOAA Oceanic and Atmospheric Research · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A new xylanase gene (xynA) from the marine microorganism Zunongwangia profunda was identified to encode 374 amino acid residues. Its product (XynA) showed the highest identity (42.78%) with a xylanase from Bacillus sp. SN5 among the characterized xylanases. XynA exhibited the highest activity at pH 6.5 and 30 °C, retaining 23 and 38% of the optimal activity at 0 and 5 °C, respectively. XynA was not only cold active, but also halophilic, and both its activity and thermostability could be significantly increased by NaCl, showing the highest activity (180% of the activity) at 3 M NaCl and retaining nearly 100% activity at 5 M NaCl, compared to the absence of NaCl. In the presence of 3 M NaCl, the k cat/K m value of XynA exhibited a 3.41-fold increase for beechwood xylan compared to no added NaCl, and the residual activity of XynA increased from 23% (no added NaCl) to 58% after 1 h incubation at 45 °C. This may be the first report concerning a cold-adapted xylanase from a non-halophilic species that displays the highest activity at a NaCl concentration range from 3 to 5 M. The features of cold activity and salt tolerance suggest the potential application of XynA in the food industry and bioethanol production from marine seaweeds.

Indexed as

Amino Acid SequenceBacterial ProteinsBase SequenceCloning, MolecularCold TemperatureEndo-1,4-beta XylanasesEnzyme StabilityFlavobacteriaceaeHydrogen-Ion ConcentrationMolecular Sequence DataSalt ToleranceXylansBacterial ProteinsEndo-1,4-beta XylanasesXylans

Identifiers

PMID24464289
OpenAlexW2088325632

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.