Evidence map›Paper›PMID 24462372›Full record

ArticleAmerican journal of human genetics2014

NR2F1 mutations cause optic atrophy with intellectual disability.

Daniëlle G M Bosch, F Nienke Boonstra, Claudia Gonzaga-Jauregui, Mafei Xu, Joep de Ligt, Shalini Jhangiani, Wojciech Wiszniewski, Donna M Muzny, Helger G Yntema, Rolph Pfundt and 14 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 73 papers.

0numbers the graph read from it
0cells of the map it votes in
73citing papers in PubMed
4.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

73 citing papers in PubMed, 141 citations in OpenAlex.

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4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

24 authors at 8 institutions in 2 countries.

Daniëlle G M BoschDepartment of Human Genetics, Radboud university medical center, 6500 HB Nijmegen, the Netherlands; Bartiméus, Institute for the Visually Impaired, 3700 BA Zeist, the Netherlands; Radboud Institute for Molecular Life Sciences, Radboud university medical center, 6500 HB Nijmegen, the Netherlands; Donders Institute for Brain, Cognition and Behavior, Radboud university medical center, 6500 HB Nijmegen, the Netherlands.
F Nienke BoonstraBartiméus, Institute for the Visually Impaired, 3700 BA Zeist, the Netherlands; Donders Institute for Brain, Cognition and Behavior, Radboud university medical center, 6500 HB Nijmegen, the Netherlands.
Claudia Gonzaga-JaureguiDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.
Mafei XuDepartment of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX 77030, USA.
Joep de LigtDepartment of Human Genetics, Radboud university medical center, 6500 HB Nijmegen, the Netherlands; Radboud Institute for Molecular Life Sciences, Radboud university medical center, 6500 HB Nijmegen, the Netherlands; Institute for Genetic and Metabolic Disease, Radboud university medical center, 6500 HB Nijmegen, the Netherlands.
Shalini JhangianiHuman Genome Sequencing Center, Baylor College of Medicine, Houston, TX 77030, USA.
Wojciech WiszniewskiDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA; Texas Children's Hospital, Houston, TX 77030, USA.
Donna M MuznyHuman Genome Sequencing Center, Baylor College of Medicine, Houston, TX 77030, USA.
Helger G YntemaDepartment of Human Genetics, Radboud university medical center, 6500 HB Nijmegen, the Netherlands.
Rolph PfundtDepartment of Human Genetics, Radboud university medical center, 6500 HB Nijmegen, the Netherlands.
Lisenka E L M VissersDepartment of Human Genetics, Radboud university medical center, 6500 HB Nijmegen, the Netherlands; Radboud Institute for Molecular Life Sciences, Radboud university medical center, 6500 HB Nijmegen, the Netherlands; Institute for Genetic and Metabolic Disease, Radboud university medical center, 6500 HB Nijmegen, the Netherlands.
Liesbeth SpruijtDepartment of Human Genetics, Radboud university medical center, 6500 HB Nijmegen, the Netherlands; Research Institute for Oncology, Radboud university medical center, 6500 HB Nijmegen, the Netherlands.
Ellen A W BloklandDepartment of Human Genetics, Radboud university medical center, 6500 HB Nijmegen, the Netherlands; Radboud Institute for Molecular Life Sciences, Radboud university medical center, 6500 HB Nijmegen, the Netherlands.
Chun-An ChenDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA; Jan and Dan Duncan Neurological Research Institute, Texas Children's Hospital, Houston, TX 77030, USA.
Baylor-Hopkins Center for Mendelian Genomics
Richard A LewisDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA; Texas Children's Hospital, Houston, TX 77030, USA; Department of Ophthalmology, Baylor College of Medicine, Houston, TX 77030, USA; Department of Pediatrics, Baylor College of Medicine, Houston, TX 77030, USA.
Sophia Y TsaiDepartment of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX 77030, USA.
Richard A GibbsDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA; Human Genome Sequencing Center, Baylor College of Medicine, Houston, TX 77030, USA.
Ming-Jer TsaiDepartment of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX 77030, USA.
James R LupskiDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA; Texas Children's Hospital, Houston, TX 77030, USA; Department of Pediatrics, Baylor College of Medicine, Houston, TX 77030, USA.
Huda Y ZoghbiDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA; Department of Pediatrics, Baylor College of Medicine, Houston, TX 77030, USA; Howard Hughes Medical Institute, 4000 Jones Bridge Road, Chevy Chase, MD 20815, USA; Department of Neuroscience, Program in Developmental Biology, Baylor College of Medicine, Houston, TX 77030, USA; Jan and Dan Duncan Neurological Research Institute, Texas Children's Hospital, Houston, TX 77030, USA.
Frans P M CremersDepartment of Human Genetics, Radboud university medical center, 6500 HB Nijmegen, the Netherlands; Radboud Institute for Molecular Life Sciences, Radboud university medical center, 6500 HB Nijmegen, the Netherlands.
Bert B A de VriesDepartment of Human Genetics, Radboud university medical center, 6500 HB Nijmegen, the Netherlands; Donders Institute for Brain, Cognition and Behavior, Radboud university medical center, 6500 HB Nijmegen, the Netherlands; Institute for Genetic and Metabolic Disease, Radboud university medical center, 6500 HB Nijmegen, the Netherlands. Electronic address: Bert.deVries@radboudumc.nl.
Christian P SchaafDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA; Texas Children's Hospital, Houston, TX 77030, USA; Jan and Dan Duncan Neurological Research Institute, Texas Children's Hospital, Houston, TX 77030, USA. Electronic address: schaaf@bcm.edu.
Baylor College of Medicine · USRadboud University Nijmegen · NLRadboud University Medical Center · NLNeurological Research Institute · USRadboud Institute for Molecular Life Sciences · NLTexas Children's Hospital · USBartiméus · NLBaylor Genetics · US

Funding

The Human Genome Sequencing CenterU54HG003273 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI GIBBS, RICHARD A · 2004 to 2015
$341.3M
TISSUE COACTIVATOR AND RECEPTOR EXPRESSION FINGERPRINTSP01DK059820 · NIDDK · INSTITUT DE GENETIQUE ET BIOLOGIE MOLECU · PI DEMAYO, FRANCESCO JOHN · 2001 to 2016
$23.1M
Baylor-Johns Hopkins Center for Mendelian GeneticsU54HG006542 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI VALLE, DAVID · 2012 to 2015
$15.6M
Steps towards a paternal gene activation therapy for Angelman syndromeU54HD083092 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI NELSON, DAVID LOREN, NEUL, JEFFREY L · 2014 to 2019
$7.8M
MECHANISM OF ACTION OF COUP TRANSCRIPTION FACTORSR37DK045641 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI TSAI, MING-JER · 1999 to 2008
$3.4M
MECHANISMS OF ACTION OF COUP TRANSCRIPTION FACTORSR01DK045641 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI TSAI, MING-JER · 1992 to 2014
$2.2M
Nuclear Orphan Receptor, COUP-TFII, in Energy Metabolism and DiseaseR01HL114539 · NHLBI · BAYLOR COLLEGE OF MEDICINE · PI TSAI, SOPHIA Y. · 2013 to 2016
$1.5M
Genome analysis to elucidate molecular mechanisms for peripheral neuropathiesK23NS078056 · NINDS · OREGON HEALTH & SCIENCE UNIVERSITY · PI WISZNIEWSKI, WOJCIECH KRZYSZTOF · 2012 to 2016
$783k
NHGRI NIH HHS U54 HG003273NHGRI NIH HHS U54 HG006542NHGRI NIH HHS U54HG006542NHLBI NIH HHS HL114539NHLBI NIH HHS R01 HL114539NICHD NIH HHS U54 HD083092NIDDK NIH HHS DK45641NIDDK NIH HHS P01 DK059820NIDDK NIH HHS R01 DK045641NIDDK NIH HHS R37 DK045641NINDS NIH HHS K23 NS078056NINDS NIH HHS K23NS078056
6 · The paper itself

Abstract

Optic nerve atrophy and hypoplasia can be primary disorders or can result from trans-synaptic degeneration arising from cerebral visual impairment (CVI). Here we report six individuals with CVI and/or optic nerve abnormalities, born after an uneventful pregnancy and delivery, who have either de novo heterozygous missense mutations in NR2F1, also known as COUP-TFI, or deletions encompassing NR2F1. All affected individuals show mild to moderate intellectual impairment. NR2F1 encodes a nuclear receptor protein that regulates transcription. A reporter assay showed that missense mutations in the zinc-finger DNA-binding domain and the putative ligand-binding domain decrease NR2F1 transcriptional activity. These findings indicate that NR2F1 plays an important role in the neurodevelopment of the visual system and that its disruption can lead to optic atrophy with intellectual disability.

Indexed as

AdolescentAdultAmino Acid SequenceChildChild, PreschoolCOUP Transcription Factor IDNA-Binding ProteinsFemaleGenotypeHumansIntellectual DisabilityMaleMolecular Sequence DataMutation, MissenseOptic AtrophyPhenotypeCOUP Transcription Factor IDNA-Binding ProteinsNR2F1 protein, human

Identifiers

PMID24462372
PMCPMC3928641
OpenAlexW2076854586

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.