Evidence map›Paper›PMID 24462251›Full record

ArticleStructure (London, England : 1993)2014

Interaction of Fapp1 with Arf1 and PI4P at a membrane surface: an example of coincidence detection.

Yizhou Liu, Richard A Kahn, James H Prestegard

Open access · bronzeAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.8field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 46 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
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  6. Article
  7. Article
  8. Roles for ELMOD2 and Rootletin in ciliogenesis.Molecular biology of the cell · 2021
    Article
  9. Article
  10. Article
  11. ARF family GTPases with links to cilia.American journal of physiology. Cell physiology · 2020
    Review
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Discovery of novel membrane binding structures and functions.Biochemistry and cell biology = Biochimie et biologie cellulaire · 2014
    Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Yizhou LiuComplex Carbohydrate Research Center, University of Georgia, Athens, GA 30602, USA.
Richard A KahnDepartment of Biochemistry, Emory University School of Medicine, Atlanta, GA 30322, USA. Electronic address: rkahn@emory.edu.
James H PrestegardComplex Carbohydrate Research Center, University of Georgia, Athens, GA 30602, USA. Electronic address: jpresteg@ccrc.uga.edu.
University of Georgia · USEmory University · US

Funding

NMR APPROACHES TO MEMBRANE ASSOCIATED ARF STRUCTURESR01GM061268 · NIGMS · UNIVERSITY OF GEORGIA (UGA) · PI PRESTEGARD, JAMES H. · 2000 to 2014
$2.9M
NIGMS NIH HHS GM061268NIGMS NIH HHS R01 GM061268
6 · The paper itself

Abstract

Interactions among ADP-ribosylation factors (ARFs), various adaptor proteins, and membrane lipids are essential for intracellular vesicle transport of a variety of cellular materials. Here, we present nuclear magnetic resonance (NMR)-based information on the nature of the interaction of yeast Arf1 (yArf1) and the pleckstrin homology (PH) domain of four-phosphate-adaptor protein 1 (Fapp1) as it occurs at a model membrane surface. Interactions favor a model in which Fapp1 is partially embedded in the membrane and interacts with a membrane-associated Arf1 molecule primarily through contacts between residues in switch I of Arf1 and regions near and under the solution exposed C-terminal extension of the PH domain. The Arf1 binding site on Fapp1-PH is distinct from a positively charged phosphatidylinositol-4-phosphate (PI4P) binding site. A structural model is constructed that supports coincidence detection of both activated ARF and PI4P as a mechanism facilitating Fapp1 recruitment to membranes.

Indexed as

Adaptor Proteins, Signal TransducingADP-Ribosylation Factor 1Amino Acid SequenceBinding SitesCell MembraneHumansMagnetic Resonance SpectroscopyModels, MolecularMolecular Sequence DataMutationPhosphatidylinositol PhosphatesProtein ConformationAdaptor Proteins, Signal TransducingADP-Ribosylation Factor 1phosphatidylinositol 4-phosphatePhosphatidylinositol PhosphatesPLEKHA3 protein, human

Identifiers

PMID24462251
PMCPMC3951685
OpenAlexW2039708677

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.