Evidence map›Paper›PMID 24461014›Full record

ArticleBiophysical journal2014

Active-site structure of the thermophilic Foc-subunit ring in membranes elucidated by solid-state NMR.

Su-Jin Kang, Yasuto Todokoro, Ikuko Yumen, Bo Shen, Iku Iwasaki, Toshiharu Suzuki, Atsushi Miyagi, Masasuke Yoshida, Toshimichi Fujiwara, Hideo Akutsu

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 11 citations in OpenAlex.

  1. Review
  2. Article
  3. Direct assignment ofJournal of biomolecular NMR · 2018
    Article
  4. Membrane proteins in their native habitat as seen by solid-state NMR spectroscopy.Protein science : a publication of the Protein Society · 2015
    Review
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Su-Jin KangDepartment of Biophysics and Chemical Biology, Seoul National University, Seoul, Republic of Korea.
Yasuto TodokoroInstitute for Protein Research, Osaka University, Suita, Japan.
Ikuko YumenInstitute for Protein Research, Osaka University, Suita, Japan.
Bo ShenInstitute for Protein Research, Osaka University, Suita, Japan.
Iku IwasakiInstitute for Protein Research, Osaka University, Suita, Japan.
Toshiharu SuzukiChemical Resources Laboratory, Tokyo Institute of Technology, Yokohama, Japan; Department of Molecular Biosciences, Kyoto Sangyo University, Kyoto, Japan.
Atsushi MiyagiInstitute for Protein Research, Osaka University, Suita, Japan.
Masasuke YoshidaChemical Resources Laboratory, Tokyo Institute of Technology, Yokohama, Japan; Department of Molecular Biosciences, Kyoto Sangyo University, Kyoto, Japan.
Toshimichi FujiwaraInstitute for Protein Research, Osaka University, Suita, Japan.
Hideo AkutsuInstitute for Protein Research, Osaka University, Suita, Japan; Department of Biophysics and Chemical Biology, Seoul National University, Seoul, Republic of Korea. Electronic address: akutsu@protein.osaka-u.ac.jp.
Protein Research Foundation · JPSeoul National University · KRTokyo Institute of Technology · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

FoF1-ATP synthase uses the electrochemical potential across membranes or ATP hydrolysis to rotate the Foc-subunit ring. To elucidate the underlying mechanism, we carried out a structural analysis focused on the active site of the thermophilic c-subunit (TFoc) ring in membranes with a solid-state NMR method developed for this purpose. We used stereo-array isotope labeling (SAIL) with a cell-free system to highlight the target. TFoc oligomers were purified using a virtual ring His tag. The membrane-reconstituted TFoc oligomer was confirmed to be a ring indistinguishable from that expressed in E. coli on the basis of the H(+)-translocation activity and high-speed atomic force microscopic images. For the analysis of the active site, 2D (13)C-(13)C correlation spectra of TFoc rings labeled with SAIL-Glu and -Asn were recorded. Complete signal assignment could be performed with the aid of the C(α)i+1-C(α)i correlation spectrum of specifically (13)C,(15)N-labeled TFoc rings. The C(δ) chemical shift of Glu-56, which is essential for H(+) translocation, and related crosspeaks revealed that its carboxyl group is protonated in the membrane, forming the H(+)-locked conformation with Asn-23. The chemical shift of Asp-61 C(γ) of the E. coli c ring indicated an involvement of a water molecule in the H(+) locking, in contrast to the involvement of Asn-23 in the TFoc ring, suggesting two different means of proton storage in the c rings.

Indexed as

Catalytic DomainTemperatureAmino Acid SequenceCell MembraneLipid BilayersMagnetic Resonance SpectroscopyModels, MolecularMolecular Sequence DataProtein MultimerizationProtein Structure, QuaternaryProtein SubunitsProton-Translocating ATPasesLipid BilayersProtein SubunitsProton-Translocating ATPases

Identifiers

PMID24461014
PMCPMC3907233
OpenAlexW2059868052

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.