Evidence map›Paper›PMID 24461013›Full record

ArticleBiophysical journal2014

Quantitation of the calcium and membrane binding properties of the C2 domains of dysferlin.

Nazish Abdullah, Murugesh Padmanarayana, Naomi J Marty, Colin P Johnson

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 65 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Elevated CaFrontiers in physiology · 2022
    Article
  16. Article
  17. Article
  18. Annexins and Membrane Repair Dysfunctions in Muscular Dystrophies.International journal of molecular sciences · 2021
    Review
  19. Ferlins and TgDOC2 inLife (Basel, Switzerland) · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Nazish AbdullahDepartment of Biochemistry and Biophysics, Oregon State University, Corvallis, Oregon.
Murugesh PadmanarayanaDepartment of Biochemistry and Biophysics, Oregon State University, Corvallis, Oregon.
Naomi J MartyDepartment of Biochemistry and Biophysics, Oregon State University, Corvallis, Oregon.
Colin P JohnsonDepartment of Biochemistry and Biophysics, Oregon State University, Corvallis, Oregon. Electronic address: colin.johnson@oregonstate.edu.
Oregon State University · US

Funding

Structural and Functional Characterization of OtoferlinR00DC011267 · NIDCD · OREGON STATE UNIVERSITY · PI JOHNSON, COLIN P · 2012 to 2014
$709k
NIDCD NIH HHS 4R00DC011267-03NIDCD NIH HHS R00 DC011267
6 · The paper itself

Abstract

Dysferlin is a large membrane protein involved in calcium-triggered resealing of the sarcolemma after injury. Although it is generally accepted that dysferlin is Ca(2+) sensitive, the Ca(2+) binding properties of dysferlin have not been characterized. In this study, we report an analysis of the Ca(2+) and membrane binding properties of all seven C2 domains of dysferlin as well as a multi-C2 domain construct. Isothermal titration calorimetry measurements indicate that all seven dysferlin C2 domains interact with Ca(2+) with a wide range of binding affinities. The C2A and C2C domains were determined to be the most sensitive, with Kd values in the tens of micromolar, whereas the C2D domain was least sensitive, with a near millimolar Kd value. Mutagenesis of C2A demonstrates the requirement for negatively charged residues in the loop regions for divalent ion binding. Furthermore, dysferlin displayed significantly lower binding affinity for the divalent cations magnesium and strontium. Measurement of a multidomain construct indicates that the solution binding affinity does not change when C2 domains are linked. Finally, sedimentation assays suggest all seven C2 domains bind lipid membranes, and that Ca(2+) enhances but is not required for interaction. This report reveals for the first time, to our knowledge, that all dysferlin domains bind Ca(2+) albeit with varying affinity and stoichiometry.

Indexed as

Amino Acid SequenceCalciumCell MembraneDysferlinHumansMagnesiumMembrane ProteinsModels, MolecularMolecular Sequence DataMuscle ProteinsMutagenesisMutationProtein BindingProtein Structure, TertiaryStrontiumCalciumDysferlinDYSF protein, humanMagnesiumMembrane ProteinsMuscle ProteinsStrontium

Identifiers

PMID24461013
PMCPMC3907215
OpenAlexW2073797769

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.