Evidence map›Paper›PMID 24460480›Full record

ArticleBiochemistry2014

Coordinating role of His216 in MgATP binding and cleavage in pyruvate carboxylase.

Abdussalam Adina-Zada, Sarawut Jitrapakdee, John C Wallace, Paul V Attwood

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 8 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Abdussalam Adina-ZadaSchool of Chemistry and Biochemistry, The University of Western Australia , 35 Stirling Highway, Crawley, WA 6009, Australia.
Sarawut Jitrapakdee
John C Wallace
Paul V Attwood
University of Western Australia · AUMahidol University · THUniversity of Adelaide · AU

Funding

The structure and function of pyruvate carboxylaseR01GM070455 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI RAYMENT, IVAN · 2005 to 2012
$2.7M
NIGMS NIH HHS GM070455
6 · The paper itself

Abstract

His216 is a well-conserved residue in pyruvate carboxylases and, on the basis of structures of the enzyme, appears to have a role in the binding of MgATP, forming an interaction with the 3'-hydroxyl group of the ribose ring. Mutation of this residue to asparagine results in a 9-fold increase in the Km for MgATP in its steady-state cleavage in the absence of pyruvate and a 3-fold increase in the Km for MgADP in its steady-state phosphorylation by carbamoyl phosphate. However, from single-turnover experiments of MgATP cleavage, the Kd of the enzyme·MgATP complex is essentially the same in the wild-type enzyme and H216N. Direct stopped-flow measurements of nucleotide binding and release using the fluorescent analogue FTP support these observations. However, the first-order rate constant for MgATP cleavage in the single-turnover experiments in H216N is only 0.75% of that for the wild-type enzyme, and thus, the MgATP cleavage step is rate-limiting in the steady state for H216N but not for the wild-type enzyme. Close examination of the structure of the enzyme suggested that His216 may also interact with Glu218, which in turn interacts with Glu305 to form a proton relay system involved in the deprotonation of bicarbonate. Single-turnover MgATP cleavage experiments with mutations of these two residues resulted in kinetic parameters similar to those observed in H216N. We suggest that the primary role of His216 is to coordinate the binding of MgATP and the deprotonation of bicarbonate in the reaction to form the putative carboxyphosphate intermediate by participation in a proton relay system involving Glu218 and Glu305.

Indexed as

Adenosine DiphosphateAdenosine TriphosphateAmino Acid SequenceAsparagineBicarbonatesBinding SitesCarbamyl PhosphateHistidineKineticsModels, MolecularMutagenesis, Site-DirectedProtein Structure, QuaternaryPyruvate CarboxylaseRhizobium etliUltracentrifugationAdenosine DiphosphateAdenosine TriphosphateAsparagineBicarbonatesCarbamyl PhosphateHistidinePyruvate Carboxylase

Identifiers

PMID24460480
PMCPMC3985934
OpenAlexW2326618191

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.