Evidence map›Paper›PMID 24459147›Full record

ArticleThe Journal of biological chemistry2014

A complex of Cas proteins 5, 6, and 7 is required for the biogenesis and stability of clustered regularly interspaced short palindromic repeats (crispr)-derived rnas (crrnas) in Haloferax volcanii.

Jutta Brendel, Britta Stoll, Sita J Lange, Kundan Sharma, Christof Lenz, Aris-Edda Stachler, Lisa-Katharina Maier, Hagen Richter, Lisa Nickel, Ruth A Schmitz and 5 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed, 1 pooled it
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 1 synthesis or guideline pooled it, 83 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Archaeal RNA processing and regulation: expanding the functional landscape.Microbiology and molecular biology reviews : MMBR · 2025
    Review
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  14. Review
  15. A Small RNA Is Linking CRISPR-Cas and Zinc Transport.Frontiers in molecular biosciences · 2021
    Article
  16. Review
  17. Review
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 7 institutions in 2 countries.

Jutta BrendelDepartment of Biology II, Ulm University, 89069 Ulm, Germany.
Britta StollDepartment of Biology II, Ulm University, 89069 Ulm, Germany.
Sita J LangeBioinformatics Group, Department of Computer Science, University of Freiburg, Georges-Köhler-Allee 106, 79110 Freiburg, Germany.
Kundan SharmaMax Planck Institute for Biophysical Chemistry, Am Fassberg 11, 37077 Göttingen, Germany.
Christof LenzMax Planck Institute for Biophysical Chemistry, Am Fassberg 11, 37077 Göttingen, Germany; Bioanalytics, Institute of Clinical Chemistry, University Medical Center Göttingen, Robert-Koch-Strasse 40, 37075 Göttingen, Germany.
Aris-Edda StachlerDepartment of Biology II, Ulm University, 89069 Ulm, Germany.
Lisa-Katharina MaierDepartment of Biology II, Ulm University, 89069 Ulm, Germany.
Hagen RichterMax Planck Institute for Terrestrial Microbiology, Karl-von-Frisch-Strasse 10, 35043 Marburg, Germany.
Lisa NickelInstitute for General Microbiology, Christian-Albrechts-Universität Kiel, 24118 Kiel, Germany.
Ruth A SchmitzInstitute for General Microbiology, Christian-Albrechts-Universität Kiel, 24118 Kiel, Germany.
Lennart RandauMax Planck Institute for Terrestrial Microbiology, Karl-von-Frisch-Strasse 10, 35043 Marburg, Germany.
Thorsten AllersSchool of Life Sciences, University of Nottingham, Queen's Medical Centre, Nottingham NG7 2UH, United Kingdom.
Henning UrlaubMax Planck Institute for Biophysical Chemistry, Am Fassberg 11, 37077 Göttingen, Germany; Bioanalytics, Institute of Clinical Chemistry, University Medical Center Göttingen, Robert-Koch-Strasse 40, 37075 Göttingen, Germany.
Rolf BackofenBioinformatics Group, Department of Computer Science, University of Freiburg, Georges-Köhler-Allee 106, 79110 Freiburg, Germany; Centre for Biological Signalling Studies (BIOSS), Cluster of Excellence, University of Freiburg, 79110 Freiburg, Germany.
Anita MarchfelderDepartment of Biology II, Ulm University, 89069 Ulm, Germany. Electronic address: anita.marchfelder@uni-ulm.de.
Universität Ulm · DEKiel University · DEMax Planck Institute for Biophysical Chemistry · DEMax Planck Institute for Terrestrial Microbiology · DEUniversity of Freiburg · DEQueen's Medical Centre · GBUniversitätsmedizin Göttingen · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The clustered regularly interspaced short palindromic repeats/CRISPR-associated (CRISPR-Cas) system is a prokaryotic defense mechanism against foreign genetic elements. A plethora of CRISPR-Cas versions exist, with more than 40 different Cas protein families and several different molecular approaches to fight the invading DNA. One of the key players in the system is the CRISPR-derived RNA (crRNA), which directs the invader-degrading Cas protein complex to the invader. The CRISPR-Cas types I and III use the Cas6 protein to generate mature crRNAs. Here, we show that the Cas6 protein is necessary for crRNA production but that additional Cas proteins that form a CRISPR-associated complex for antiviral defense (Cascade)-like complex are needed for crRNA stability in the CRISPR-Cas type I-B system in Haloferax volcanii in vivo. Deletion of the cas6 gene results in the loss of mature crRNAs and interference. However, cells that have the complete cas gene cluster (cas1-8b) removed and are transformed with the cas6 gene are not able to produce and stably maintain mature crRNAs. crRNA production and stability is rescued only if cas5, -6, and -7 are present. Mutational analysis of the cas6 gene reveals three amino acids (His-41, Gly-256, and Gly-258) that are essential for pre-crRNA cleavage, whereas the mutation of two amino acids (Ser-115 and Ser-224) leads to an increase of crRNA amounts. This is the first systematic in vivo analysis of Cas6 protein variants. In addition, we show that the H. volcanii I-B system contains a Cascade-like complex with a Cas7, Cas5, and Cas6 core that protects the crRNA.

Indexed as

RNA StabilityAmino Acid SequenceArchaeal ProteinsClustered Regularly Interspaced Short Palindromic RepeatsHaloferax volcaniiMolecular Sequence DataRNA, ArchaealArchaeal ProteinsRNA, ArchaealArchaeaCas6CRISPR/CascrRNAHaloferax volcaniiMicrobiologyMolecular BiologyMolecular GeneticsProtein ComplexesType I-B

Identifiers

PMID24459147
PMCPMC3945376
OpenAlexW2011019268

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.