Evidence map›Paper›PMID 24454739›Full record

ArticlePloS one2014

Novel genes participating in the formation of prismatic and nacreous layers in the pearl oyster as revealed by their tissue distribution and RNA interference knockdown.

Daisuke Funabara, Fumito Ohmori, Shigeharu Kinoshita, Hiroki Koyama, Saeri Mizutani, Ayaka Ota, Yuki Osakabe, Kiyohito Nagai, Kaoru Maeyama, Kikuhiko Okamoto and 3 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
1.6field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 52 citations in OpenAlex.

  1. The Gln-rich protein twip1 promotes high-density {110} twins formation in the shell of the limpetProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  2. CRISPR/Cas9 Knockout of Shell Matrix Protein 1 in the Slipper-Snail Crepidula atrasolea.Journal of experimental zoology. Part B, Molecular and developmental evolution · 2025
    Article
  3. Article
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  6. Review
  7. Article
  8. Structural colors of pearls.Scientific reports · 2021
    Article
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  16. From the raw bar to the bench: Bivalves as models for human health.Developmental and comparative immunology · 2019
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 1 country.

Daisuke FunabaraGraduate School of Bioresources, Mie University, Tsu, Mie, Japan.
Fumito OhmoriGraduate School of Agricultural and Life Sciences, The University of Tokyo, Bunkyo, Tokyo, Japan.
Shigeharu KinoshitaGraduate School of Agricultural and Life Sciences, The University of Tokyo, Bunkyo, Tokyo, Japan.
Hiroki KoyamaGraduate School of Agricultural and Life Sciences, The University of Tokyo, Bunkyo, Tokyo, Japan.
Saeri MizutaniGraduate School of Bioresources, Mie University, Tsu, Mie, Japan.
Ayaka OtaGraduate School of Bioresources, Mie University, Tsu, Mie, Japan.
Yuki OsakabeGraduate School of Bioresources, Mie University, Tsu, Mie, Japan.
Kiyohito NagaiPearl Research Laboratory, K. Mikimoto & Co., Ltd., Shima, Mie, Japan.
Kaoru MaeyamaMikimoto Pharmaceutical Co., Ltd., Ise, Mie, Japan.
Kikuhiko OkamotoMikimoto Pharmaceutical Co., Ltd., Ise, Mie, Japan.
Satoshi KanohGraduate School of Bioresources, Mie University, Tsu, Mie, Japan.
Shuichi AsakawaGraduate School of Agricultural and Life Sciences, The University of Tokyo, Bunkyo, Tokyo, Japan.
Shugo WatabeGraduate School of Agricultural and Life Sciences, The University of Tokyo, Bunkyo, Tokyo, Japan ; Kitasato University School of Marine Bioscience, Sagamihara, Kanagawa, Japan.
Mie University · JPThe University of Tokyo · JPKitasato University · JPPearl Science Laboratory · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In our previous publication, we identified novel gene candidates involved in shell formation by EST analyses of the nacreous and prismatic layer-forming tissues in the pearl oyster Pinctada fucata. In the present study, 14 of those genes, including two known genes, were selected and further examined for their involvement in shell formation using the RNA interference. Molecular characterization based on the deduced amino acid sequences showed that seven of the novel genes encode secretory proteins. The tissue distribution of the transcripts of the genes, as analyzed by RT-PCR and in situ hybridization, was mostly consistent with those obtained by the EST analysis reported previously. Shells in the pearl oysters injected with dsRNAs targeting genes 000027, 000058, 000081, 000096, 000113 (nacrein), 000118, 000133 and 000411 (MSI60), which showed expression specific to the nacreous layer forming tissues, showed abnormal surface appearance in this layer. Individuals injected with dsRNAs targeting genes 000027, 000113 and 000133 also exhibited abnormal prismatic layers. Individuals injected with dsRNAs targeting genes 000031, 000066, 000098, 000145, 000194 and 000200, which showed expression specific to prismatic layer forming tissues, displayed an abnormal surface appearance in both the nacreous and prismatic layers. Taken together, the results suggest that the genes involved in prismatic layer formation might also be involved in the formation of the nacreous layers.

Indexed as

RNA InterferenceAnimalsCloning, MolecularDNA, ComplementaryOstreidaeRNA, MessengerTissue DistributionDNA, ComplementaryRNA, Messenger

Identifiers

PMID24454739
PMCPMC3893171
OpenAlexW2023974015

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.