Evidence map›Paper›PMID 24454682›Full record

ArticlePloS one2014

Microarray analysis of the Ler regulon in enteropathogenic and enterohaemorrhagic Escherichia coli strains.

Lewis E H Bingle, Chrystala Constantinidou, Robert K Shaw, Md Shahidul Islam, Mala Patel, Lori A S Snyder, David J Lee, Charles W Penn, Stephen J W Busby, Mark J Pallen

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
3.6field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. GrlR, a negative regulator in enteropathogenicFrontiers in microbiology · 2023
    Article
  3. Article
  4. Regulatory Evolution of theJournal of bacteriology · 2022
    Article
  5. Article
  6. Plasma membrane profiling during enterohemorrhagicThe Journal of biological chemistry · 2018
    Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Regulation ofEcoSal Plus · 2017
    Review
  13. PerC Manipulates Metabolism and Surface Antigens in EnteropathogenicFrontiers in cellular and infection microbiology · 2017
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Lewis E H BingleSchool of Biosciences, University of Birmingham, Edgbaston, Birmingham, United Kingdom.
Chrystala ConstantinidouSchool of Biosciences, University of Birmingham, Edgbaston, Birmingham, United Kingdom.
Robert K ShawSchool of Biosciences, University of Birmingham, Edgbaston, Birmingham, United Kingdom.
Md Shahidul IslamSchool of Biosciences, University of Birmingham, Edgbaston, Birmingham, United Kingdom.
Mala PatelSchool of Biosciences, University of Birmingham, Edgbaston, Birmingham, United Kingdom.
Lori A S SnyderSchool of Biosciences, University of Birmingham, Edgbaston, Birmingham, United Kingdom.
David J LeeSchool of Biosciences, University of Birmingham, Edgbaston, Birmingham, United Kingdom.
Charles W PennSchool of Biosciences, University of Birmingham, Edgbaston, Birmingham, United Kingdom.
Stephen J W BusbySchool of Biosciences, University of Birmingham, Edgbaston, Birmingham, United Kingdom.
Mark J PallenSchool of Biosciences, University of Birmingham, Edgbaston, Birmingham, United Kingdom.
University of Birmingham · GB

Funding

Biotechnology and Biological Sciences Research Council BB/C516701/1Biotechnology and Biological Sciences Research Council BB/E020860/1
6 · The paper itself

Abstract

The type III protein secretion system is an important pathogenicity factor of enteropathogenic and enterohaemorrhagic Escherichia coli pathotypes. The genes encoding this apparatus are located on a pathogenicity island (the locus of enterocyte effacement) and are transcriptionally activated by the master regulator Ler. In each pathotype Ler is also known to regulate genes located elsewhere on the chromosome, but the full extent of the Ler regulon is unclear, especially for enteropathogenic E. coli. The Ler regulon was defined for two strains of E. coli: E2348/69 (enteropathogenic) and EDL933 (enterohaemorrhagic) in mid and late log phases of growth by DNA microarray analysis of the transcriptomes of wild-type and ler mutant versions of each strain. In both strains the Ler regulon is focused on the locus of enterocyte effacement - all major transcriptional units of which are activated by Ler, with the sole exception of the LEE1 operon during mid-log phase growth in E2348/69. However, the Ler regulon does extend more widely and also includes unlinked pathogenicity genes: in E2348/69 more than 50 genes outside of this locus were regulated, including a number of known or potential pathogenicity determinants; in EDL933 only 4 extra-LEE genes, again including known pathogenicity factors, were activated. In E2348/69, where the Ler regulon is clearly growth phase dependent, a number of genes including the plasmid-encoded regulator operon perABC, were found to be negatively regulated by Ler. Negative regulation by Ler of PerC, itself a positive regulator of the ler promoter, suggests a negative feedback loop involving these proteins.

Indexed as

Oligonucleotide Array Sequence AnalysisAdaptation, PhysiologicalEnterohemorrhagic Escherichia coliEnteropathogenic Escherichia coliEscherichia coli ProteinsEvolution, MolecularGene Transfer, HorizontalGenome, BacterialRegulonTrans-ActivatorsTranscription, GeneticEscherichia coli ProteinsLer protein, E coliTrans-Activators

Identifiers

PMID24454682
PMCPMC3891560
OpenAlexW2046899172

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.