Evidence map›Paper›PMID 24454317›Full record

ArticleFrontiers in plant science2014

Using transcription of six Puccinia triticina races to identify the effective secretome during infection of wheat.

Myron Bruce, Kerri A Neugebauer, David L Joly, Pierre Migeon, Christina A Cuomo, Shichen Wang, Eduard Akhunov, Guus Bakkeren, James A Kolmer, John P Fellers

Open access · goldAbstract read
In one paragraph

Article in Frontiers in plant science, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
13.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 68 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Review
  6. Candidate effectors for leaf rust resistance geneFrontiers in microbiology · 2023
    Article
  7. International journal of molecular sciences · 2022
    Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Long-Read-BasedFrontiers in genetics · 2020
    Article
  15. Predicating the Effector Proteins Secreted byFrontiers in microbiology · 2020
    Article
  16. Article
  17. Article
  18. Review
  19. A review of wheat diseases-a field perspective.Molecular plant pathology · 2018
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 2 countries.

Myron BruceUSDA-ARS Hard Winter Wheat Genetics Research Unit, Department of Plant Pathology Manhattan, KS, USA.
Kerri A NeugebauerDepartment of Plant Pathology, Kansas State University Manhattan, KS, USA.
David L JolyDépartement de biologie, Université de Moncton Moncton, NB, Canada.
Pierre MigeonDepartment of Plant Pathology, Kansas State University Manhattan, KS, USA.
Christina A CuomoBroad Institute of MIT and Harvard Cambridge, MA, USA.
Shichen WangDepartment of Plant Pathology, Kansas State University Manhattan, KS, USA.
Eduard AkhunovDepartment of Plant Pathology, Kansas State University Manhattan, KS, USA.
Guus BakkerenPacific Agri-Food Research Centre, Agriculture and Agri-Food Canada Summerland, BC, Canada.
James A KolmerUSDA-ARS Cereal Disease Laboratory, Department of Plant Pathology, University of Minnesota St. Paul, MN, USA.
John P FellersUSDA-ARS Hard Winter Wheat Genetics Research Unit, Department of Plant Pathology Manhattan, KS, USA.
Kansas State University · USCenter for Grain and Animal Health Research · USAgriculture and Agri-Food Canada · CABroad Institute · USUniversité de Moncton · CAUniversity of Minnesota · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Wheat leaf rust, caused by the basidiomycete Puccinia triticina, can cause yield losses of up to 20% in wheat producing regions. During infection, the fungus forms haustoria that secrete proteins into the plant cell and effect changes in plant transcription, metabolism, and defense. It is hypothesized that new races emerge as a result of overcoming plant resistance via changes in the secreted effector proteins. To understand gene expression during infection and find genetic differences associated with races, RNA from wheat leaves infected with six different rust races, at 6 days post inoculation, was sequenced using Illumina. As P. triticina is an obligate biotroph, RNA from both the host and fungi were present and separated by alignment to the P. triticina genome and a wheat EST reference. A total of 222,571 rust contigs were assembled from 165 million reads. An examination of the resulting contigs revealed 532 predicted secreted proteins among the transcripts. Of these, 456 were found in all races. Fifteen genes were found with amino acid changes, corresponding to putative avirulence effectors potentially recognized by 11 different leaf rust resistance (Lr) genes. Twelve of the potential avirulence effectors have no homology to known genes. One gene had significant similarity to cerato-platanin, a known fungal elicitor, and another showed similarity to fungal tyrosinase, an enzyme involved in melanin synthesis. Temporal expression profiles were developed for these genes by qRT-PCR and show that the genes expression patterns were consistent between races from infection initiation to just prior to spore eruption.

Indexed as

effectorsleaf rustPuccinia triticinaRNA sequencingsecreted peptides

Identifiers

PMID24454317
PMCPMC3888938
OpenAlexW2159219755

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.