Evidence map›Paper›PMID 24454279›Full record

ArticleFrontiers in cellular neuroscience2014

NMDA receptor-dependent regulation of miRNA expression and association with Argonaute during LTP in vivo.

Balagopal Pai, Taweeporn Siripornmongcolchai, Birgitte Berentsen, Ashraf Pakzad, Christel Vieuille, Ståle Pallesen, Maciej Pajak, T Ian Simpson, J Douglas Armstrong, Karin Wibrand and 1 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in cellular neuroscience, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 30 citations in OpenAlex.

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  11. Editorial for "Regulatory RNAs in the nervous system".Frontiers in cellular neuroscience · 2015
    Article
  12. The RNA-centred view of the synapse: non-coding RNAs and synaptic plasticity.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2014
    Review
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 2 countries.

Balagopal PaiDepartment of Biomedicine and K.G. Jebsen Centre for Research on Neuropsychiatric Disorders, University of Bergen Bergen, Norway.
Taweeporn SiripornmongcolchaiDepartment of Biomedicine and K.G. Jebsen Centre for Research on Neuropsychiatric Disorders, University of Bergen Bergen, Norway.
Birgitte BerentsenDepartment of Biomedicine and K.G. Jebsen Centre for Research on Neuropsychiatric Disorders, University of Bergen Bergen, Norway.
Ashraf PakzadDepartment of Biomedicine and K.G. Jebsen Centre for Research on Neuropsychiatric Disorders, University of Bergen Bergen, Norway.
Christel VieuilleDepartment of Biomedicine and K.G. Jebsen Centre for Research on Neuropsychiatric Disorders, University of Bergen Bergen, Norway.
Ståle PallesenDepartment of Psychosocial Science, University of Bergen Bergen, Norway.
Maciej PajakInstitute for Adaptive and Neural Computation, School of Informatics, University of Edinburgh Edinburgh, UK.
T Ian SimpsonInstitute for Adaptive and Neural Computation, School of Informatics, University of Edinburgh Edinburgh, UK ; Biomathematics and Statistics Scotland JCMB, Edinburgh, UK.
J Douglas ArmstrongInstitute for Adaptive and Neural Computation, School of Informatics, University of Edinburgh Edinburgh, UK.
Karin WibrandDepartment of Biomedicine and K.G. Jebsen Centre for Research on Neuropsychiatric Disorders, University of Bergen Bergen, Norway.
Clive R BramhamDepartment of Biomedicine and K.G. Jebsen Centre for Research on Neuropsychiatric Disorders, University of Bergen Bergen, Norway.
University of Bergen · NOUniversity of Edinburgh · GB

Funding

Biotechnology and Biological Sciences Research Council BB/I004491/1
6 · The paper itself

Abstract

microRNAs (miRNAs) are major regulators of protein synthesis in the brain. A major goal is to identify changes in miRNA expression underlying protein synthesis-dependent forms of synaptic plasticity such as long-term potentiation (LTP). Previous analyses focused on changes in miRNA levels in total lysate samples. Here, we asked whether changes in total miRNA accurately reflect changes in the amount of miRNA bound to Argonaute protein within the miRNA-induced silencing complex (miRISC). Ago2 immunoprecipitation was used to isolate RISC-associated miRNAs following high-frequency stimulation (HFS)-induced LTP in the dentate gyrus of anesthetized rats. Using locked-nucleic acid-based PCR cards for high-throughput screening and independent validation by quantitative TaqMan RT-PCR, we identified differential regulation of Ago2-associated and total miRNA expression. The ratio of Ago2/total miRNA expression was regulated bidirectionally in a miRNA-specific manner and was largely dependent on N-methyl-D-aspartate receptor (NMDA) activation during LTP induction. The present results identify miRNA association with Ago2 as a potential control point in activity-dependent synaptic plasticity in the adult brain. Finally, novel computational analysis for targets of the Ago2-associated miRNAs identifies 21 pathways that are enriched and differentially targeted by the miRNAs including axon guidance, mTOR, MAPK, Ras, and LTP.

Indexed as

Argonautegene expressionhippocampusmicroRNAmicroRNA target predictionprotein synthesisRNA-induced silencing complexsynaptic plasticity

Identifiers

PMID24454279
PMCPMC3888942
OpenAlexW2144113049

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.