Evidence map›Paper›PMID 24453988›Full record

ArticlePLoS genetics2014

Genomic confirmation of hybridisation and recent inbreeding in a vector-isolated Leishmania population.

Matthew B Rogers, Tim Downing, Barbara A Smith, Hideo Imamura, Mandy Sanders, Milena Svobodova, Petr Volf, Matthew Berriman, James A Cotton, Deborah F Smith

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 87 papers.

0numbers the graph read from it
0cells of the map it votes in
87citing papers in PubMed
19.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

87 citing papers in PubMed, 177 citations in OpenAlex.

  1. Extensive heterozygosity and genetic exchange among natural populations ofProceedings of the National Academy of Sciences of the United States of America · 2026
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  6. Epidemiological dynamics ofMicrobial genomics · 2025
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  8. Unraveling the Genome Diversity ofLife (Basel, Switzerland) · 2025
    Review
  9. Article
  10. Article
  11. Susceptibility of diverse sand fly species to Toscana virus.PLoS neglected tropical diseases · 2025
    Article
  12. Cross-subgenus hybridization betweenbioRxiv : the preprint server for biology · 2025
    Article
  13. BALB/c mice infection with hybridFrontiers in cellular and infection microbiology · 2025
    Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

27 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 3 countries.

Matthew B RogersWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, United Kingdom ; Centre for Immunology and Infection, Department of Biology, University of York, York, United Kingdom.
Tim DowningWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, United Kingdom.
Barbara A SmithCentre for Immunology and Infection, Department of Biology, University of York, York, United Kingdom.
Hideo ImamuraWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, United Kingdom ; Unit of Molecular Parasitology, Department of Parasitology, Institute of Tropical Medicine, Antwerp, Belgium.
Mandy SandersWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, United Kingdom.
Milena SvobodovaDepartment of Parasitology, Fac. Sci., Charles University, Prague, Czech Republic.
Petr VolfDepartment of Parasitology, Fac. Sci., Charles University, Prague, Czech Republic.
Matthew BerrimanWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, United Kingdom.
James A CottonWellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Cambridge, United Kingdom.
Deborah F SmithCentre for Immunology and Infection, Department of Biology, University of York, York, United Kingdom.
Wellcome Sanger Institute · GBUniversity of York · GBCharles University · CZ

Funding

Wellcome TrustWellcome Trust 076355Wellcome Trust 085822Wellcome Trust 098051
6 · The paper itself

Abstract

Although asexual reproduction via clonal propagation has been proposed as the principal reproductive mechanism across parasitic protozoa of the Leishmania genus, sexual recombination has long been suspected, based on hybrid marker profiles detected in field isolates from different geographical locations. The recent experimental demonstration of a sexual cycle in Leishmania within sand flies has confirmed the occurrence of hybridisation, but knowledge of the parasite life cycle in the wild still remains limited. Here, we use whole genome sequencing to investigate the frequency of sexual reproduction in Leishmania, by sequencing the genomes of 11 Leishmania infantum isolates from sand flies and 1 patient isolate in a focus of cutaneous leishmaniasis in the Çukurova province of southeast Turkey. This is the first genome-wide examination of a vector-isolated population of Leishmania parasites. A genome-wide pattern of patchy heterozygosity and SNP density was observed both within individual strains and across the whole group. Comparisons with other Leishmania donovani complex genome sequences suggest that these isolates are derived from a single cross of two diverse strains with subsequent recombination within the population. This interpretation is supported by a statistical model of the genomic variability for each strain compared to the L. infantum reference genome strain as well as genome-wide scans for recombination within the population. Further analysis of these heterozygous blocks indicates that the two parents were phylogenetically distinct. Patterns of linkage disequilibrium indicate that this population reproduced primarily clonally following the original hybridisation event, but that some recombination also occurred. This observation allowed us to estimate the relative rates of sexual and asexual reproduction within this population, to our knowledge the first quantitative estimate of these events during the Leishmania life cycle.

Indexed as

Hybridization, GeneticInbreedingAnimalsGenetics, PopulationHumansInsect VectorsLeishmaniaLeishmaniasisLife Cycle StagesLinkage DisequilibriumMicrosatellite RepeatsPhylogenyPolymorphism, Single NucleotideReproductionTurkey

Identifiers

PMID24453988
PMCPMC3894156
OpenAlexW2031557596

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.