Evidence map›Paper›PMID 24453550›Full record

ArticleZooKeys2013

Applications of DNA barcoding to fish landings: authentication and diversity assessment.

Alba Ardura, Serge Planes, Eva Garcia-Vazquez

Abstract read
In one paragraph

Article in ZooKeys, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

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  14. FishTrace: a genetic catalogue of European fishes.Database : the journal of biological databases and curation · 2017
    Article
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  17. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Alba ArduraUniversity of Oviedo, Department of Functional Biology. C/ Julian Claveria s/n. 33006-Oviedo, Spain.
Serge PlanesUSR 3278 CNRS - EPHE. Centre de Recherche Insulaire et Observatoire de l'Environnement (CRIOBE) BP 1013 - 98 729, Papetoai, Moorea, Polynésie française ; Centre de Biologie et d'Ecologie Tropicale et Méditerranéenne, Université de Perpignan, 52 Av. Paul Alduy - 66860 Perpignan cedex, France.
Eva Garcia-VazquezUniversity of Oviedo, Department of Functional Biology. C/ Julian Claveria s/n. 33006-Oviedo, Spain.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

DNA barcoding methodologies are being increasingly applied not only for scientific purposes but also for diverse real-life uses. Fisheries assessment is a potential niche for DNA barcoding, which serves for species authentication and may also be used for estimating within-population genetic diversity of exploited fish. Analysis of single-sequence barcodes has been proposed as a shortcut for measuring diversity in addition to the original purpose of species identification. Here we explore the relative utility of different mitochondrial sequences (12S rDNA, COI, cyt b, and D-Loop) for application as barcodes in fisheries sciences, using as case studies two marine and two freshwater catches of contrasting diversity levels. Ambiguous catch identification from COI and cyt b was observed. In some cases this could be attributed to duplicated names in databases, but in others it could be due to mitochondrial introgression between closely related species that may obscure species assignation from mtDNA. This last problem could be solved using a combination of mitochondrial and nuclear genes. We suggest to simultaneously analyze one conserved and one more polymorphic gene to identify species and assess diversity in fish catches.

Indexed as

freshwater fisheriesgenetic diversitymarine fisheriesmitochondrial DNA markersSpecies identification

Identifiers

PMID24453550
PMCPMC3890670

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.