Evidence map›Paper›PMID 24453226›Full record

ArticleJournal of experimental botany2014

A 13-lipoxygenase, TomloxC, is essential for synthesis of C5 flavour volatiles in tomato.

Jiyuan Shen, Denise Tieman, Jeffrey B Jones, Mark G Taylor, Eric Schmelz, Alisa Huffaker, Dawn Bies, Kunsong Chen, Harry J Klee

Open access · hybridAbstract read
In one paragraph

Article in Journal of experimental botany, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 72 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
72citing papers in PubMed, 1 pooled it
21.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

72 citing papers in PubMed, 1 synthesis or guideline pooled it, 190 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Understanding the role of oxylipins inFrontiers in plant science · 2025
    Review
  8. Horticulture research · 2024
    Article
  9. Article
  10. The mProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  11. Lipids and Lipid-Mediated Signaling in Plant-Pathogen Interactions.International journal of molecular sciences · 2024
    Review
  12. Article
  13. Vegetable biology and breeding in the genomics era.Science China. Life sciences · 2023
    Review
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Lipoxygenase (LOX) in Sweet and Hot Pepper (International journal of molecular sciences · 2022
    Article
  20. Review

12 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Jiyuan ShenHorticultural Sciences, University of Florida, PO Box 110690, Gainesville, FL 32611-0690, USA.
Denise Tieman
Jeffrey B Jones
Mark G Taylor
Eric Schmelz
Alisa Huffaker
Dawn Bies
Kunsong Chen
Harry J Klee
University of Florida · USZhejiang University · CNAgricultural Research Service · USCenter for Medical, Agricultural and Veterinary Entomology · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

C5 volatile compounds, derived from fatty acids, are among the most important contributors to consumer liking of fresh tomatoes. Despite their important roles in flavour, the genes responsible for C5 volatile synthesis have yet to be identified. This work shows that their synthesis is catalysed in part by a 13-lipoxygenase (LOX), TomloxC, the same enzyme responsible for synthesis of C6 volatiles. C5 synthesis is independent of hydroperoxide lyase (HPL); moreover, HPL knockdown significantly increased C5 volatile synthesis. This LOX-dependent, HPL-independent pathway functions in both fruits and leaves. Synthesis of C5 volatiles increases in leaves following mechanical wounding but does not increase in response to infection with Xanthomonas campestris pv. vesicatoria. Large reductions in C5 and C6 volatiles in antisense TomloxC knockdown plants were observed but those reductions did not alter the development of disease symptoms, indicating that these volatiles do not have an important defensive function against this bacterial pathogen.

Indexed as

Tastealpha-Linolenic AcidBiosynthetic PathwaysCyclopentanesDown-RegulationFruitGene Expression Regulation, PlantLinoleic AcidLipoxygenaseOxylipinsPlant DiseasesPlant LeavesPlant ProteinsPlants, Genetically ModifiedSolanum lycopersicumVolatile Organic Compounds13-lipoxygenasealpha-Linolenic AcidCyclopentanesjasmonic acidLinoleic AcidLipoxygenaseOxylipinsPlant ProteinsVolatile Organic Compounds13-lipoxygenaseC5 volatileshydroperoxide lyasejasmonic acidtomatowoundingXanthomonas campestris pv. vesicatoria.

Identifiers

PMID24453226
PMCPMC3904703
OpenAlexW2125897878

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.