Evidence map›Paper›PMID 24452298›Full record

ArticleJournal of the American Society for Mass Spectrometry2014

Understanding gas phase modifier interactions in rapid analysis by differential mobility-tandem mass spectrometry.

Amol Kafle, Stephen L Coy, Bryan M Wong, Albert J Fornace, James J Glick, Paul Vouros

Abstract read
In one paragraph

Article in Journal of the American Society for Mass Spectrometry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 42 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Amol KafleDepartment of Chemistry and Chemical Biology and Barnett Institute, Northeastern University, Boston,, MA, 02115, USA, kafle.a@neu.edu.
Stephen L Coy
Bryan M Wong
Albert J Fornace
James J Glick
Paul Vouros
Northeastern University · USDrexel University · USGeorgetown University · US

Funding

LC-MS Analysis of DNA Adducts of Aromatic Amines: Relationship to Bladder CancerR01CA069390 · NCI · NORTHEASTERN UNIVERSITY · PI VOUROS, PAUL · 1996 to 2013
$2.7M
PA-12-149: Research Supplements to Promote Diversity in Health-Related Research (Admin Supp): Metabolomic biomarkers and instrumentation for assessment of radiation injury,R01AI101798 · NIAID · GEORGETOWN UNIVERSITY · PI FORNACE, ALBERT J · 2012 to 2016
$2.2M
NCI NIH HHS R01 CA069390NCI NIH HHS R01 CA 069390-16NIAID NIH HHS R01 AI101798
6 · The paper itself

Abstract

A systematic study involving the use and optimization of gas-phase modifiers in quantitative differential mobility-mass spectrometry (DMS-MS) analysis is presented using nucleoside-adduct biomarkers of DNA damage as an important reference point for analysis in complex matrices. Commonly used polar protic and polar aprotic modifiers have been screened for use against two deoxyguanosine adducts of DNA: N-(deoxyguanosin-8-yl)-4-aminobiphenyl (dG-C8-4-ABP) and N-(deoxyguanosin-8-y1)-2-amino-l-methyl-6-phenylimidazo[4,5-b]pyridine (dG-C8-PhIP). Particular attention was paid to compensation voltage (CoV) shifts, peak shapes, and product ion signal intensities while optimizing the DMS-MS conditions. The optimized parameters were then applied to rapid quantitation of the DNA adducts in calf thymus DNA. After a protein precipitation step, adduct levels corresponding to less than one modification in 10(6) normal DNA bases were detected using the DMS-MS platform. Based on DMS fundamentals and ab initio thermochemical results, we interpret the complexity of DMS modifier responses in terms of thermal activation and the development of solvent shells. At very high bulk gas temperature, modifier dipole moment may be the most important factor in cluster formation and cluster geometry, but at lower temperatures, multi-neutral clusters are important and less predictable. This work provides a useful protocol for targeted DNA adduct quantitation and a basis for future work on DMS modifier effects.

Indexed as

Aminobiphenyl CompoundsAnimalsCattleDeoxyguanosineDNADNA AdductsDNA DamageGasesImidazolesIonsKineticsTandem Mass SpectrometryAminobiphenyl Compoundscalf thymus DNADeoxyguanosineDNADNA AdductsGasesImidazolesIonsN-(deoxyguanosin-8-yl)-2-amino-1-methyl-6-phenylimidazo(4,5-b)pyridineN-(deoxyguanosin-8-yl)-4-aminobiphenyl

Identifiers

PMID24452298
PMCPMC4057941
OpenAlexW2168742724

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.