Evidence map›Paper›PMID 24449907›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

Processing of microRNA primary transcripts requires heme in mammalian cells.

Sara H Weitz, Ming Gong, Ian Barr, Shimon Weiss, Feng Guo

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 88 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Update on heme biosynthesis, tissue-specific regulation, heme transport, relation to iron metabolism and cellular energy.Liver international : official journal of the International Association for the Study of the Liver · 2024
    Review
  8. The structural landscape of Microprocessor mediated pri-bioRxiv : the preprint server for biology · 2024
    Article
  9. Article
  10. Regulatory role of RNA-binding proteins in microRNA biogenesis.Frontiers in molecular biosciences · 2024
    Review
  11. Gas-sensing riboceptors.RNA biology · 2024
    Article
  12. Review
  13. Article
  14. Modulation of Nrf2/HO-1 by Natural Compounds in Lung Cancer.Antioxidants (Basel, Switzerland) · 2023
    Review
  15. Article
  16. Review
  17. Review
  18. Regulation of protein function and degradation by heme, heme responsive motifs, and CO.Critical reviews in biochemistry and molecular biology · 2022
    Review
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Sara H WeitzInterdepartmental Program in Molecular, Cellular, and Integrative Physiology, Department of Biological Chemistry, David Geffen School of Medicine, Department of Chemistry and Biochemistry, and Department of Physiology, David Geffen School of Medicine, University of California, Los Angeles, CA 90095.
Ming Gong
Ian Barr
Shimon Weiss
Feng Guo
University of California, Los Angeles · USLaboratoire d’immunologie intégrative du cancer · FR

Funding

CHEMISTRY BIOLOGY INTERFACE TRAINING PROGRAMT32GM008496 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI MAYNARD, HEATHER D · 1993 to 2019
$6.3M
Single Molecule Studies of Prokaryotic and Eukaryotic Transcription MachineriesR01GM069709 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI WEISS, SHIMON · 2005 to 2012
$2.9M
Molecular recognition and regulation in microRNA processing by the DGCR8 proteinR01GM080563 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI GUO, FENG · 2007 to 2011
$1.3M
NIGMS NIH HHS GM069709NIGMS NIH HHS GM080563NIGMS NIH HHS R01 GM069709NIGMS NIH HHS R01 GM080563NIGMS NIH HHS T32 GM008496NIGMS NIH HHS T32GM008496
6 · The paper itself

Abstract

DiGeorge syndrome critical region gene 8 (DGCR8) is the RNA-binding partner protein of the nuclease Drosha. DGCR8 and Drosha recognize and cleave primary transcripts of microRNAs (pri-miRNAs) in the maturation of canonical microRNAs (miRNAs) in animals. We previously reported that human, frog, and starfish DGCR8 bind heme when expressed in Escherichia coli and that Fe(III) heme activates apoDGCR8 in reconstituted pri-miRNA processing assays. However, the physiological relevance of heme in miRNA maturation has not been clear. Here, we present a live-cell pri-miRNA processing assay that produces robust signals and faithfully indicates DGCR8 and Drosha activities. We demonstrate that all known heme-binding-deficient DGCR8 mutants are defective in pri-miRNA processing in HeLa cells. DGCR8 contains a previously uncharacterized heme-binding motif, "IPCL," that is also required for its activity. Heme availability and biosynthesis in HeLa cells positively affect pri-miRNA processing and production of mature miRNA. These results establish an essential function for heme in pri-miRNA processing in mammalian cells. Our study suggests that abnormal heme biosynthesis and degradation may contribute to diseases via miRNA-mediated gene regulation networks.

Indexed as

AnimalsBase SequenceFluorescenceGenes, ReporterHeLa CellsHemeHumansMammalsMicroRNAsMolecular Sequence DataMutant ProteinsNucleotide MotifsProtein BindingProteinsRibonuclease IIIRNA-Binding ProteinsDGCR8 protein, humanDROSHA protein, humanHemeMicroRNAsMutant ProteinsProteinsRibonuclease IIIRNA-Binding ProteinsRNA, Messengerfluorescence microscopyironnoncoding RNAprotoporphyrin IXRNA processing

Identifiers

PMID24449907
PMCPMC3918773
OpenAlexW2055751200

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.