Evidence map›Paper›PMID 24449901›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

Spatiotemporal separation of PER and CRY posttranslational regulation in the mammalian circadian clock.

Peter C St John, Tsuyoshi Hirota, Steve A Kay, Francis J Doyle

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 58 citations in OpenAlex.

  1. Article
  2. Circadian clock and cancer.Military Medical Research · 2026
    Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Nutrient timing and metabolic regulation.The Journal of physiology · 2022
    Review
  11. Article
  12. Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. Review
  18. Calcium Sets the Clock in Ameloblasts.Frontiers in physiology · 2020
    Article
  19. Article
  20. Mathematical modeling of circadian rhythms.Wiley interdisciplinary reviews. Systems biology and medicine · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Peter C St JohnDepartment of Chemical Engineering, University of California, Santa Barbara, CA 93106-5080.
Tsuyoshi Hirota
Steve A Kay
Francis J Doyle
Center for Systems Biology · USUniversity of California, Santa Barbara · US

Funding

SYNTHETIC SYSTEMSP50GM085764 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HASTY, JEFF M, IDEKER, TREY · 2010 to 2018
$23.3M
MOLECULAR ANALYSIS OF CIRCADIAN RHYTHMS IN SINGLE CELLSR01MH051573 · NIMH · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI KAY, STEVE A · 1994 to 2013
$4.9M
Role of Ror proteins in the mammalian circadian clockR01GM074868 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI KAY, STEVE A · 2006 to 2014
$3.2M
MECHANISMS AND MODELING OF NETWORKED CIRCADIAN PACEMAKER SYNCHRONIZATIONR01GM096873 · NIGMS · WASHINGTON UNIVERSITY · PI DOYLE, FRANCIS J, HENSON, MICHAEL · 2011 to 2014
$1.1M
NIGMS NIH HHS 1R01GM096873-01NIGMS NIH HHS GM074868NIGMS NIH HHS GM085764NIGMS NIH HHS P50 GM085764NIGMS NIH HHS R01 GM074868NIGMS NIH HHS R01 GM096873NIMH NIH HHS MH051573NIMH NIH HHS R01 MH051573
6 · The paper itself

Abstract

Posttranslational regulation of clock proteins is an essential part of mammalian circadian rhythms, conferring sensitivity to metabolic state and offering promising targets for pharmacological control. Two such regulators, casein kinase 1 (CKI) and F-box and leucine-rich repeat protein 3 (FBXL3), modulate the stability of closely linked core clock proteins period (PER) and cryptochrome (CRY), respectively. Inhibition of either CKI or FBXL3 leads to longer periods, and their effects are independent despite targeting proteins with similar roles in clock function. A mechanistic understanding of this independence, however, has remained elusive. Our analysis of cellular circadian clock gene reporters further differentiated between the actions of CKI and FBXL3 by revealing opposite amplitude responses from each manipulation. To understand the functional relationship between the CKI-PER and FBXL3-CRY pathways, we generated robust mechanistic predictions by applying a bootstrap uncertainty analysis to multiple mathematical circadian models. Our results indicate that CKI primarily regulates the accumulating phase of the PER-CRY repressive complex by controlling the nuclear import rate, whereas FBXL3 separately regulates the duration of transcriptional repression in the nucleus. Dynamic simulations confirmed that this spatiotemporal separation is able to reproduce the independence of the two regulators in period regulation, as well as their opposite amplitude effect. As a result, this study provides further insight into the molecular clock machinery responsible for maintaining robust circadian rhythms.

Indexed as

Circadian ClocksProtein Processing, Post-TranslationalSpatio-Temporal AnalysisAdenineAnimalsCarbazolesCryptochromesF-Box ProteinsGenes, ReporterHEK293 CellsHumansMammalsModels, BiologicalPeriod Circadian ProteinsSignal TransductionSulfonamidesAdenineCarbazolesCryptochromesF-Box ProteinsFBXL3 protein, humanKL001longdaysinPeriod Circadian ProteinsSulfonamidesgene regulationidentifiability analysissensitivity analysis

Identifiers

PMID24449901
PMCPMC3918757
OpenAlexW2029276159

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.