Evidence map›Paper›PMID 24449862›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

Novel antiviral host factor, TNK1, regulates IFN signaling through serine phosphorylation of STAT1.

Ee Lyn Ooi, Stephanie T Chan, Noell E Cho, Courtney Wilkins, Jessica Woodward, Meng Li, Ushio Kikkawa, Timothy Tellinghuisen, Michael Gale, Takeshi Saito

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed, 2 pooled it
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 2 syntheses or guidelines pooled it, 36 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
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  7. Transcriptional control of interferon-stimulated genes.The Journal of biological chemistry · 2024
    Review
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  20. Hepatic IFN-Induced Protein with Tetratricopeptide Repeats Regulation of HCV Infection.Journal of interferon & cytokine research : the official journal of the International Society for Interferon and Cytokine Research · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Ee Lyn OoiDivision of Gastrointestinal and Liver Diseases, Department of Medicine, Keck School of Medicine, University of Southern California, Los Angeles, CA 90033.
Stephanie T Chan
Noell E Cho
Courtney Wilkins
Jessica Woodward
Meng Li
Ushio Kikkawa
Timothy Tellinghuisen
Michael Gale
Takeshi Saito
University of Southern California · USUniversity of Washington · USKobe University · JPScripps Research Institute · US

Funding

The Southernearch Center for ALPD and CirrhosisP50AA011999 · NIAAA · UNIVERSITY OF SOUTHERN CALIFORNIA · PI ANNA S. GUKOVSKAYA · 1999 to 2026
$45.8M
USC RESEARCH CENTER FOR LIVER DISEASES: PILOT PROGRAMSP30DK048522 · NIDDK · UNIVERSITY OF SOUTHERN CALIFORNIA · PI KAPLOWITZ, NEIL · 1995 to 2020
$21.8M
NON-PARENCHYMAL LIVER CELL CORER24AA012885 · NIAAA · UNIVERSITY OF SOUTHERN CALIFORNIA · PI TSUKAMOTO, HIDEKAZU · 2001 to 2025
$8.1M
CARD14 is essential for hepatitis C virus replication and activation of NFKBR01DK090014 · NIDDK · SCRIPPS FLORIDA · PI TELLINGHUISEN, TIMOTHY · 2011 to 2015
$2.2M
NIAAA NIH HHS 5P50AA011999NIAAA NIH HHS P50 AA011999NIAAA NIH HHS R24 AA012885NIDDK NIH HHS 5P30DK048522NIDDK NIH HHS P30 DK048522NIDDK NIH HHS R01 DK090014
6 · The paper itself

Abstract

In response to viral infection, the host induces over 300 IFN-stimulated genes (ISGs), which are the central component of intracellular antiviral innate immunity. Inefficient induction of ISGs contributes to poor control and persistence of hepatitis C virus infection. Therefore, further understanding of the hepatocytic ISG regulation machinery will guide us to an improved management strategy against hepatitis C virus infection. In this study, comprehensive genome-wide, high-throughput cDNA screening for genes regulating ISG expression identified a tyrosine kinase nonreceptor 1 (TNK1) as a unique player in the ISG induction pathway. The immune-modulatory function of TNK1 has never been studied, and this study characterizes its significance in antiviral innate immunity. TNK1 is abundantly expressed in hepatocytes and maintains basal ISG expression. More importantly, TNK1 plays a critical role in type I IFN-mediated ISG induction. We discovered that the activated IFN receptor complex recruits TNK1 from the cytoplasm. TNK1 is then phosphorylated to enhance its kinase activity. The activated TNK1 potentiates JAK-STAT signaling through dual phosphorylation of STAT1 at tyrosine 701 and serine 727 amino acid positions. Our loss-of-function approach demonstrated that TNK1 governs a cluster of ISG expression that defines the TNK1 pathway effector genes. More importantly, TNK1 abundance is inversely correlated to viral replication efficiency and is also a determinant factor for the hepatocytic response to antiviral treatment. Taken together, our studies found a critical but unidentified integrated component of the IFN-JAK-STAT signaling cascade.

Indexed as

Signal TransductionAnimalsCell Line, TumorDisease SusceptibilityDNA, ComplementaryFetal ProteinsGene DeletionGene Expression RegulationGenetic TestingGenome, HumanHepacivirusHepatitis CHepatocytesHumansImmunity, InnateInterferonsDNA, ComplementaryFetal ProteinsInterferonsJanus Kinase 1Kos1 protein, mousePhosphoserineProtein-Tyrosine KinasesSTAT1 Transcription FactorTNK1 protein, humanhepatic immunitynonreceptor tyrosine kinasePKCprotein kinase C

Identifiers

PMID24449862
PMCPMC3918791
OpenAlexW1986838525

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.