Evidence map›Paper›PMID 24449848›Full record

ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2014

Prdm9 polymorphism unveils mouse evolutionary tracks.

Hiromitsu Kono, Masaru Tamura, Naoki Osada, Hitoshi Suzuki, Kuniya Abe, Kazuo Moriwaki, Kunihiro Ohta, Toshihiko Shiroishi

Open access · goldAbstract read
In one paragraph

Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 63 citations in OpenAlex.

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  6. High prevalence of PRDM9-independent recombination hotspots in placental mammals.Proceedings of the National Academy of Sciences of the United States of America · 2024
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  14. Cataloging HumanFrontiers in cell and developmental biology · 2021
    Article
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  19. Population Genomics of the House Mouse and the Brown Rat.Methods in molecular biology (Clifton, N.J.) · 2020
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Hiromitsu KonoMammalian Genetics Laboratory, National Institute of Genetics, 1111 Yata, Mishima, Shizuoka 411-8540, Japan Department of Biophysics and Biochemistry, The University of Tokyo, Tokyo 153-8902, Japan.
Masaru TamuraMammalian Genetics Laboratory, National Institute of Genetics, 1111 Yata, Mishima, Shizuoka 411-8540, Japan.
Naoki OsadaDivision of Evolutionary Genetics, National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan.
Hitoshi SuzukiLaboratory of Ecology and Genetics, Graduate School of Environmental Earth Science, Hokkaido University, Sapporo, Hokkaido 060-0810, Japan.
Kuniya AbeBioResource Center, RIKEN Tsukuba Institute, Tsukuba, Ibaraki 305-0074, Japan.
Kazuo MoriwakiBioResource Center, RIKEN Tsukuba Institute, Tsukuba, Ibaraki 305-0074, Japan.
Kunihiro OhtaDepartment of Biophysics and Biochemistry, The University of Tokyo, Tokyo 153-8902, Japan Department of Life Sciences, The University of Tokyo, Tokyo 153-8902, Japan.
Toshihiko ShiroishiMammalian Genetics Laboratory, National Institute of Genetics, 1111 Yata, Mishima, Shizuoka 411-8540, Japan tshirois@lab.nig.ac.jp.
National Institute of Genetics · JPRIKEN BioResource Research Center · JPHokkaido University · JPThe University of Tokyo · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

PR/SET domain containing 9 (Prdm9) mediates histone modifications such as H3K4me3 and marks hotspots of meiotic recombination. In many mammalian species, the Prdm9 gene is highly polymorphic. Prdm9 polymorphism is assumed to play two critical roles in evolution: to diversify the spectrum of meiotic recombination hotspots and to cause male hybrid sterility, leading to reproductive isolation and speciation. Nevertheless, information about Prdm9 sequences in natural populations is very limited. In this study, we conducted a comprehensive population survey on Prdm9 polymorphism in the house mouse, Mus musculus. Overall M. musculus Prdm9 displays an extraordinarily high level of polymorphism, particularly in regions encoding zinc finger repeats, which recognize recombination hotspots. Prdm9 alleles specific to various M. musculus subspecies dominate in subspecies territories. Moreover, introgression into other subspecies territories was found for highly divergent Prdm9 alleles associated with t-haplotype. The results of our phylogeographical analysis suggest that the requirement for hotspot diversity depends on geographical range and time span in mouse evolution, and that Prdm9 polymorphism has not been maintained by a simple balanced selection in the population of each subspecies.

Indexed as

Evolution, MolecularAmino Acid SequenceAnimalsChromosomes, MammalianHaplotypesHistone-Lysine N-MethyltransferaseMiceMolecular Sequence DataPhylogenyPhylogeographyPolymorphism, GeneticSpecies SpecificityZinc FingersHistone-Lysine N-Methyltransferaseprdm9 protein, mouseevolutionmousepolymorphismPrdm9

Identifiers

PMID24449848
PMCPMC4060951
OpenAlexW2127863375

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.