Evidence map›Paper›PMID 24448798›Full record

ArticleThe Journal of biological chemistry2014

Converting the yeast arginine can1 permease to a lysine permease.

Kassem Ghaddar, Eva-Maria Krammer, Natalija Mihajlovic, Sylvain Brohée, Bruno André, Martine Prévost

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 56 citations in OpenAlex.

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  11. Regulation of Amino Acid Transport in Saccharomyces cerevisiae.Microbiology and molecular biology reviews : MMBR · 2019
    Review
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  13. Function and Regulation of Acid Resistance Antiporters.The Journal of membrane biology · 2019
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  14. Review
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  16. Review
  17. Article
  18. Review
  19. Conformation-dependent partitioning of yeast nutrient transporters into starvation-protective membrane domains.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  20. The yeast HeLife · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Kassem GhaddarLaboratoire de Physiologie Moléculaire de la Cellule CP300, Institut de Biologie et de Médecine Moléculaires (IBMM), Université Libre de Bruxelles (ULB), 11 Rue des Pr. Jeener et Brachet, 6041 Gosselies, Belgium.
Eva-Maria KrammerStructure et Fonction des Membranes Biologiques, Centre de Biologie Structurale et de Bioinformatique, Université Libre de Bruxelles (ULB), Bld. du Triomphe, 1050 Brussels, Belgium.
Natalija MihajlovicLaboratoire de Physiologie Moléculaire de la Cellule CP300, Institut de Biologie et de Médecine Moléculaires (IBMM), Université Libre de Bruxelles (ULB), 11 Rue des Pr. Jeener et Brachet, 6041 Gosselies, Belgium.
Sylvain BrohéeMachine Learning Group, Computer Science Department, Faculté des Sciences, Université Libre de Bruxelles (ULB), 1050 Brussels, Belgium.
Bruno AndréLaboratoire de Physiologie Moléculaire de la Cellule CP300, Institut de Biologie et de Médecine Moléculaires (IBMM), Université Libre de Bruxelles (ULB), 11 Rue des Pr. Jeener et Brachet, 6041 Gosselies, Belgium. Electronic address: bran@ulb.ac.be.
Martine PrévostStructure et Fonction des Membranes Biologiques, Centre de Biologie Structurale et de Bioinformatique, Université Libre de Bruxelles (ULB), Bld. du Triomphe, 1050 Brussels, Belgium. Electronic address: mprevost@ulb.ac.be.
Université Libre de Bruxelles · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Amino acid uptake in yeast cells is mediated by about 16 plasma membrane permeases, most of which belong to the amino acid-polyamine-organocation (APC) transporter family. These proteins display various substrate specificity ranges. For instance, the general amino acid permease Gap1 transports all amino acids, whereas Can1 and Lyp1 catalyze specific uptake of arginine and lysine, respectively. Although Can1 and Lyp1 have different narrow substrate specificities, they are close homologs. Here we investigated the molecular rules determining the substrate specificity of the H(+)-driven arginine-specific permease Can1. Using a Can1-Lyp1 sequence alignment as a guideline and a three-dimensional Can1 structural model based on the crystal structure of the bacterial APC family arginine/agmatine antiporter, we introduced amino acid substitutions liable to alter Can1 substrate specificity. We show that the single substitution T456S results in a Can1 variant transporting lysine in addition to arginine and that the combined substitutions T456S and S176N convert Can1 to a Lyp1-like permease. Replacement of a highly conserved glutamate in the Can1 binding site leads to variants (E184Q and E184A) incapable of any amino acid transport, pointing to a potential role for this glutamate in H(+) coupling. Measurements of the kinetic parameters of arginine and lysine uptake by the wild-type and mutant Can1 permeases, together with docking calculations for each amino acid in their binding site, suggest a model in which residues at positions 176 and 456 confer substrate selectivity at the ligand-binding stage and/or in the course of conformational changes required for transport.

Indexed as

Amino Acid SequenceAmino Acid Transport Systems, BasicArginineBinding SitesBiological TransportImaging, Three-DimensionalModels, ChemicalMolecular Sequence DataMutagenesis, Site-DirectedProtein ConformationSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSubstrate SpecificityAmino Acid Transport Systems, BasicArginineCAN1 protein, S cerevisiaeLYP1 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsAmino Acid TransportLigand DockingMembrane ProteinsMolecular ModelingProtein EngineeringProton TransportSite-directed MutagenesisTransportersYeast Physiology

Identifiers

PMID24448798
PMCPMC3945382
OpenAlexW2037178605

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.