Evidence map›Paper›PMID 24445599›Full record

ArticleMolecular cancer research : MCR2014

Gene silencing associated with SWI/SNF complex loss during NSCLC development.

Shujie Song, Vonn Walter, Mehmet Karaca, Ying Li, Christopher S Bartlett, Dominic J Smiraglia, Daniel Serber, Christopher D Sproul, Christoph Plass, Jiren Zhang and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cancer research : MCR, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 31 citations in OpenAlex.

  1. Trial
  2. Review
  3. Article
  4. The role of SMARCA4 in lung cancer.Scientific reports · 2025
    Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. BRG1 regulation by miR-155 in human leukemia and lymphoma cell lines.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2017
    Article
  12. A New Chromatin-Cytoskeleton Link in Cancer.Molecular cancer research : MCR · 2016
    Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 2 countries.

Shujie SongLineberger Cancer Center, Room 32-048, University of North Carolina, Chapel Hill, NC 27599-7295. weissman@med.unc.edu.
Vonn Walter
Mehmet Karaca
Ying Li
Christopher S Bartlett
Dominic J Smiraglia
Daniel Serber
Christopher D Sproul
Christoph Plass
Jiren Zhang
D Neil Hayes
Yanfang Zheng
Bernard E Weissman
Cancer Genetics (United States) · USEpigenomics (Germany) · DEHeidelberg University · DEUniversity of North Carolina at Chapel Hill · USCancer Research Center · USUNC Lineberger Comprehensive Cancer Center

Funding

Virology Research Program (Program 4)P30CA016086 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Deborah F. Tate · 1985 to 2026
$201.5M
TOXICOLOGYT32ES007126 · NIEHS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI ILONA JASPERS, Bernard E. Weissman · 1985 to 2026
$13.0M
ENVIRONMENTAL PATHOLOGYT32ES007017 · NIEHS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI KAUFMAN, DAVID G. · 1985 to 2011
$5.1M
Biostatistics for Research in Genomics and CancerT32CA106209 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI JOSEPH G IBRAHIM, Naim Ur Rashid · 2004 to 2026
$4.8M
SWI/SNF complex loss facilitates gene silencing during NSCLC developmentR01CA138841 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI WEISSMAN, BERNARD E. · 2009 to 2010
$614k
NCI NIH HHS CA138841NCI NIH HHS P30 CA016086NCI NIH HHS R01 CA138841NCI NIH HHS T32 CA106209NIEHS NIH HHS T32 ES007017NIEHS NIH HHS T32 ES007126NIEHS NIH HHS T32ES07017NIEHS NIH HHS T32ES07126
6 · The paper itself

Abstract

unlabelledThe SWI/SNF chromatin-remodeling complex regulates gene expression and alters chromatin structures in an ATP-dependent manner. Recent sequencing efforts have shown mutations in BRG1 (SMARCA4), one of two mutually exclusive ATPase subunits in the complex, in a significant number of human lung tumor cell lines and primary non-small cell lung carcinoma (NSCLC) clinical specimens. To determine how BRG1 loss fuels tumor progression in NSCLC, molecular profiling was performed after restoration of BRG1 expression or treatment with a histone deacetylase inhibitor or a DNA methyltransferase (DNMT) inhibitor in a BRG1-deficient NSCLC cells. Importantly, validation studies from multiple cell lines revealed that BRG1 reexpression led to substantial changes in the expression of CDH1, CDH3, EHF, and RRAD that commonly undergo silencing by other epigenetic mechanisms during NSCLC development. Furthermore, treatment with DNMT inhibitors did not restore expression of these transcripts, indicating that this common mechanism of gene silencing did not account for their loss of expression. Collectively, BRG1 loss is an important mechanism for the epigenetic silencing of target genes during NSCLC development. IMPLICATIONS: Inactivation of the SWI/SNF complex provides a novel mechanism to induce gene silencing during NSCLC development.

Indexed as

Carcinoma, Non-Small-Cell LungCell Line, TumorChromosomal Proteins, Non-HistoneDisease ProgressionDNA HelicasesDNA MethylationGene ExpressionGene Expression Regulation, NeoplasticGene SilencingGenomicsHumansLung NeoplasmsNuclear ProteinsPromoter Regions, GeneticTissue Array AnalysisTranscription FactorsChromosomal Proteins, Non-HistoneDNA HelicasesNuclear ProteinsSMARCA2 protein, humanSMARCA4 protein, humanSWI-SNF-B chromatin-remodeling complexTranscription Factors

Identifiers

PMID24445599
PMCPMC3989415
OpenAlexW2156804244

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.