Evidence map›Paper›PMID 24445420›Full record

ArticleMammalian genome : official journal of the International Mammalian Genome Society2014

A genetic map of Peromyscus with chromosomal assignment of linkage groups (a Peromyscus genetic map).

Jane Kenney-Hunt, Adrienne Lewandowski, Travis C Glenn, Julie L Glenn, Olga V Tsyusko, Rachel J O'Neill, Judy Brown, Clifton M Ramsdell, Quang Nguyen, Tony Phan and 5 more

Abstract readComparative Study
In one paragraph

Article in Mammalian genome : official journal of the International Mammalian Genome Society, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
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  4. An enhancer ofProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  5. Article
  6. Article
  7. The genome ofScience advances · 2019
    Article
  8. An updated genetic map of Peromyscus with chromosomal assignment of linkage groups.Mammalian genome : official journal of the International Mammalian Genome Society · 2018
    Article
  9. Article
  10. Article
  11. Article
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  15. Hematologic and serum biochemical values of 4 species of Peromyscus mice and their hybrids.Journal of the American Association for Laboratory Animal Science : JAALAS · 2014
    Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 1 country.

Jane Kenney-HuntDepartment of Biological Sciences and Peromyscus Genetic Stock Center, University of South Carolina, Columbia, SC, 29208, USA.
Adrienne Lewandowski
Travis C Glenn
Julie L Glenn
Olga V Tsyusko
Rachel J O'Neill
Judy Brown
Clifton M Ramsdell
Quang Nguyen
Tony Phan
Kimberly R Shorter
Michael J Dewey
Gabor Szalai
Paul B Vrana
Michael R Felder
University of South Carolina · USUniversity of California, Irvine · USUniversity of Connecticut · USBio-Rad (United States) · USSavannah River National Laboratory · USUniversity of Kentucky · US

Funding

Development of Peromyscus GenomicsR01GM069601 · NIGMS · UNIVERSITY OF SOUTH CAROLINA AT COLUMBIA · PI FELDER, MICHAEL RAY · 2004 to 2007
$1.3M
Peromyscus Laboratory Models for Biomedical ResearchP40OD010961 · OD · UNIVERSITY OF SOUTH CAROLINA AT COLUMBIA · PI FELDER, MICHAEL RAY, SZALAI, GABOR · 2012 to 2014
$705k
NIGMS NIH HHS GM069601NIGMS NIH HHS R01 GM069601NIH HHS P40 OD010961
6 · The paper itself

Abstract

The rodent genus Peromyscus is the most numerous and species-rich mammalian group in North America. The naturally occurring diversity within this genus allows opportunities to investigate the genetic basis of adaptation, monogamy, behavioral and physiological phenotypes, growth control, genomic imprinting, and disease processes. Increased genomic resources including a high quality genetic map are needed to capitalize on these opportunities. We produced interspecific hybrids between the prairie deer mouse (P. maniculatus bairdii) and the oldfield mouse (P. polionotus) and scored meiotic recombination events in backcross progeny. A genetic map was constructed by genotyping of backcross progeny at 185 gene-based and 155 microsatellite markers representing all autosomes and the X-chromosome. Comparison of the constructed genetic map with the molecular maps of Mus and Rattus and consideration of previous results from interspecific reciprocal whole chromosome painting allowed most linkage groups to be unambiguously assigned to specific Peromyscus chromosomes. Based on genomic comparisons, this Peromyscus genetic map covers ~83% of the Rattus genome and 79% of the Mus genome. This map supports previous results that the Peromyscus genome is more similar to Rattus than Mus. For example, coverage of the 20 Rattus autosomes and the X-chromosome is accomplished with only 28 segments of the Peromyscus map, but coverage of the 19 Mus autosomes and the X-chromosome requires 40 chromosomal segments of the Peromyscus map. Furthermore, a single Peromyscus linkage group corresponds to about 91% of the rat and only 76% of the mouse X-chromosomes.

Indexed as

Chromosome MappingHybridization, GeneticAnimalsChromosome PaintingCrosses, GeneticDNA PrimersGenetic MarkersGenotypeIn Situ Hybridization, FluorescenceMiceMicrosatellite RepeatsPeromyscusPhylogenyPolymerase Chain ReactionRatsDNA PrimersGenetic Markers

Identifiers

PMID24445420
PMCPMC3961507
OpenAlexW2072784289

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.