Evidence map›Paper›PMID 24444765›Full record

ArticleJournal of theoretical biology2014

A mathematical model of the sterol regulatory element binding protein 2 cholesterol biosynthesis pathway.

Bonhi S Bhattacharya, Peter K Sweby, Anne-Marie Minihane, Kim G Jackson, Marcus J Tindall

Open access · hybridAbstract read
In one paragraph

Article in Journal of theoretical biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 32 citations in OpenAlex.

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  11. Computationally Modeling Lipid Metabolism and Aging: A Mini-review.Computational and structural biotechnology journal · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Bonhi S BhattacharyaDepartment of Mathematics and Statistics, University of Reading, Whiteknights, Reading RG6 6AX, UK.
Peter K SwebyDepartment of Mathematics and Statistics, University of Reading, Whiteknights, Reading RG6 6AX, UK.
Anne-Marie MinihaneDepartment of Nutrition, Norwich Medical School, University of East Anglia, Norwich NR4 7TJ, UK.
Kim G JacksonDepartment of Food and Nutritional Sciences, University of Reading, Whiteknights, Reading RG6 6AP, UK; Institute of Cardiovascular and Metabolic Research, University of Reading, Whiteknights, Reading RG6 6AA, UK.
Marcus J TindallDepartment of Mathematics and Statistics, University of Reading, Whiteknights, Reading RG6 6AX, UK; School of Biological Sciences, University of Reading, Whiteknights, Reading RG6 6AJ, UK; Institute of Cardiovascular and Metabolic Research, University of Reading, Whiteknights, Reading RG6 6AA, UK. Electronic address: m.tindall@reading.ac.uk.
University of Reading · GBUniversity of East Anglia · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cholesterol is one of the key constituents for maintaining the cellular membrane and thus the integrity of the cell itself. In contrast high levels of cholesterol in the blood are known to be a major risk factor in the development of cardiovascular disease. We formulate a deterministic nonlinear ordinary differential equation model of the sterol regulatory element binding protein 2 (SREBP-2) cholesterol genetic regulatory pathway in a hepatocyte. The mathematical model includes a description of genetic transcription by SREBP-2 which is subsequently translated to mRNA leading to the formation of 3-hydroxy-3-methylglutaryl coenzyme A reductase (HMGCR), a main regulator of cholesterol synthesis. Cholesterol synthesis subsequently leads to the regulation of SREBP-2 via a negative feedback formulation. Parameterised with data from the literature, the model is used to understand how SREBP-2 transcription and regulation affects cellular cholesterol concentration. Model stability analysis shows that the only positive steady-state of the system exhibits purely oscillatory, damped oscillatory or monotic behaviour under certain parameter conditions. In light of our findings we postulate how cholesterol homeostasis is maintained within the cell and the advantages of our model formulation are discussed with respect to other models of genetic regulation within the literature.

Indexed as

Biosynthetic PathwaysModels, BiologicalCholesterolGene Expression RegulationRNA, MessengerSterol Regulatory Element Binding Protein 2CholesterolRNA, MessengerSterol Regulatory Element Binding Protein 2Genetic regulationNonlinear ordinary differential equationSREBP-2Transcription factor

Identifiers

PMID24444765
PMCPMC4062966
OpenAlexW2126269328

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.