Evidence map›Paper›PMID 24444611›Full record

ArticleThe journals of gerontology. Series A, Biological sciences and medical sciences2014

Who are the Okinawans? Ancestry, genome diversity, and implications for the genetic study of human longevity from a geographically isolated population.

Nasrine Bendjilali, Wen-Chi Hsueh, Qimei He, D Craig Willcox, Caroline M Nievergelt, Timothy A Donlon, Pui-Yan Kwok, Makoto Suzuki, Bradley J Willcox

Abstract readComparative Study
In one paragraph

Article in The journals of gerontology. Series A, Biological sciences and medical sciences, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  3. Article
  4. Review
  5. Article
  6. Article
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  8. Review
  9. Article
  10. Association between handgrip strength, walking, age-related illnesses and cognitive status in a sample of Portuguese centenarians.European review of aging and physical activity : official journal of the European Group for Research into Elderly and Physical Activity · 2017
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Nasrine BendjilaliDepartment of Mathematics, Rowan University, Glassboro, New Jersey. bendjilali@rowan.edu.
Wen-Chi HsuehDepartments of Medicine and Epidemiology & Biostatistics, University of California, San Francisco.
Qimei HePacific Health Research and Education Institute, Honolulu, Hawaii. Department of Research, Kuakini Medical Center, Honolulu, Hawaii.
D Craig Willcox
Caroline M NievergeltDepartment of Psychiatry, University of California, San Diego, La Jolla.
Timothy A DonlonPacific Health Research and Education Institute, Honolulu, Hawaii. Ohana Genetics, Honolulu, Hawaii.
Pui-Yan KwokDepartment of Dermatology, Institute for Human Genetics, and Cardiovascular Research Institute, University of California, San Francisco.
Makoto SuzukiOkinawa Research Center for Longevity Science, Urasoe, Okinawa, Japan. Faculty of Medicine, University of the Ryukyus, Nishihara, Okinawa, Japan.
Bradley J WillcoxPacific Health Research and Education Institute, Honolulu, Hawaii. Department of Research, Kuakini Medical Center, Honolulu, Hawaii. Okinawa Research Center for Longevity Science, Urasoe, Okinawa, Japan. Department of Geriatric Medicine, John A Burns School of Medicine, University of Hawaii, Honolulu, Hawaii.

Funding

Systems BiologyU19AG023122 · NIA · TRANSLATIONAL GENOMICS RESEARCH INST · PI NICHOLAS Joseph SCHORK · 2004 to 2026
$102.6M
FOXO3 Genotype, InflammAging, Cardiovascular Disease, and Dementia. Kuakini Hawaii Lifespan Study III. Administrative Supplement.R01AG027060 · NIA · KUAKINI MEDICAL CENTER · PI Gregory J. Tranah, BRADLEY JOHN WILLCOX · 2005 to 2026
$8.1M
Pharmacogenomics of Mood Stabilizer Response in Bipolar DisorderU01MH092758 · NIMH · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI KELSOE, JOHN R. · 2010 to 2014
$6.2M
Genomic Predictors of Combat Stress Vulnerability and ResilienceR01MH093500 · NIMH · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI NIEVERGELT, CAROLINE M · 2011 to 2013
$2.7M
Genetic Epidemiology of Telomere Length in the AmishR01AG023692 · NIA · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HSUEH, WEN-CHI · 2004 to 2008
$1.5M
Circadian rhythm genes and sleep disturbances in the elderlyR01AG030474 · NIA · CALIFORNIA PACIFIC MED CTR RES INSTITUTE · PI TRANAH, GREGORY J. · 2008 to 2010
$1.4M
Energy-sensing Pathways, Healthy Aging and LongevityR01AG038707 · NIA · KUAKINI MEDICAL CENTER · PI WILLCOX, BRADLEY JOHN · 2011 to 2014
$1.4M
Diurnal Preference in Amish FamiliesK01AG022782 · NIA · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI HSUEH, WEN-CHI · 2003 to 2007
$730k
Defining the Genetics of Exceptional Human SurvivalK08AG022788 · NIA · PACIFIC HEALTH RESEARCH INSTITUTE · PI WILLCOX, BRADLEY J · 2003 to 2005
$409k
NIA NIH HHS 5R01AG027060-06NIA NIH HHS 5R01AG038707-02NIA NIH HHS K01 AG022782NIA NIH HHS K08 AG022788NIA NIH HHS K08 AG22788-02NIA NIH HHS R01 AG023692NIA NIH HHS R01 AG027060NIA NIH HHS R01 AG030474NIA NIH HHS R01 AG038707NIA NIH HHS R03 AG02-293-01NIA NIH HHS U19 AG023122NIMH NIH HHS R01 MH093500NIMH NIH HHS R01MH093500NIMH NIH HHS U01 MH092758
6 · The paper itself

Abstract

Isolated populations have advantages for genetic studies of longevity from decreased haplotype diversity and long-range linkage disequilibrium. This permits smaller sample sizes without loss of power, among other utilities. Little is known about the genome of the Okinawans, a potential population isolate, recognized for longevity. Therefore, we assessed genetic diversity, structure, and admixture in Okinawans, and compared this with Caucasians, Chinese, Japanese, and Africans from HapMap II, genotyped on the same Affymetrix GeneChip Human Mapping 500K array. Principal component analysis, haplotype coverage, and linkage disequilibrium decay revealed a distinct Okinawan genome-more homogeneity, less haplotype diversity, and longer range linkage disequilibrium. Population structure and admixture analyses utilizing 52 global reference populations from the Human Genome Diversity Cell Line Panel demonstrated that Okinawans clustered almost exclusively with East Asians. Sibling relative risk (λs) analysis revealed that siblings of Okinawan centenarians have 3.11 times (females) and 3.77 times (males) more likelihood of centenarianism. These findings suggest that Okinawans are genetically distinct and share several characteristics of a population isolate, which are prone to develop extreme phenotypes (eg, longevity) from genetic drift, natural selection, and population bottlenecks. These data support further exploration of genetic influence on longevity in the Okinawans.

Indexed as

Life ExpectancyAged, 80 and overAsian PeopleChromosome MappingFemaleGenetic VariationGenotypeHaplotypesHumansJapanLongevityMaleReference ValuesAncestryGenome diversityHapMap.LongevityOkinawa

Identifiers

PMID24444611
PMCPMC4271021

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.