Evidence map›Paper›PMID 24443581›Full record

ArticleThe Journal of biological chemistry2014

Targeting γ-herpesvirus 68 Bcl-2-mediated down-regulation of autophagy.

Minfei Su, Yang Mei, Ruslan Sanishvili, Beth Levine, Christopher L Colbert, Sangita Sinha

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed, 2 pooled it
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 2 syntheses or guidelines pooled it, 45 citations in OpenAlex.

  1. Guideline
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  7. Review
  8. Review
  9. The Multi-Faceted Role of Autophagy During Animal Virus Infection.Frontiers in cellular and infection microbiology · 2022
    Review
  10. Article
  11. Article
  12. Review
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  17. Article
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  19. Article
  20. Autophagy, EVs, and Infections: A Perfect Question for a Perfect Time.Frontiers in cellular and infection microbiology · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Minfei SuFrom the Department of Chemistry and Biochemistry, North Dakota State University, Fargo, North Dakota 58108-6050.
Yang Mei
Ruslan Sanishvili
Beth Levine
Christopher L Colbert
Sangita Sinha
North Dakota State University · USArgonne National Laboratory · USThe University of Texas Southwestern Medical Center · US

Funding

TARGETING AND DELIVERYP20RR015566 · NCRR · NORTH DAKOTA STATE UNIVERSITY · PI DORSAM, GLENN PAUL · 2001 to 2011
$19.0M
Pilot Projects: Core DP30GM103332 · NIGMS · NORTH DAKOTA STATE UNIVERSITY · PI SIBI, MUKUND P. · 2012 to 2016
$4.9M
Beclin 1-Bcl-2 Interactions: Effects on AutophagyR01CA109618 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI LEVINE, BETH C · 2004 to 2014
$3.1M
Molecular mechanism by which gamma-herpesviruses evade autophagyR21AI078108 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI SINHA, SANGITA · 2008 to 2009
$415k
Intrinsically Disordered Regions in Autophagy ProteinsR03NS090939 · NINDS · NORTH DAKOTA STATE UNIVERSITY · PI SINHA, SANGITA · 2014 to 2015
$145k
NCI NIH HHS R01 CA109618NCRR NIH HHS P20 RR015566NIAID NIH HHS R21 AI078108NIAID NIH HHS R21 AI078198NIGMS NIH HHS P30 GM103332NIGMS NIH HHS P30 GM103332-01NINDS NIH HHS R03 NS090939OCPHP CDC HHS PR120718-P1
6 · The paper itself

Abstract

γ-herpesviruses (γHVs) are common human pathogens that encode homologs of the anti-apoptotic cellular Bcl-2 proteins, which are critical to viral reactivation and oncogenic transformation. The murine γHV68 provides a tractable in vivo model for understanding general features of these important human pathogens. Bcl-XL, a cellular Bcl-2 homolog, and the murine γHV68 Bcl-2 homolog, M11, both bind to a BH3 domain within the key autophagy effector Beclin 1 with comparable affinities, resulting in the down-regulation of Beclin 1-mediated autophagy. Despite this similarity, differences in residues lining the binding site of M11 and Bcl-XL dictate varying affinities for the different BH3 domain-containing proteins. Here we delineate Beclin 1 differential specificity determinants for binding to M11 or Bcl-XL by quantifying autophagy levels in cells expressing different Beclin 1 mutants and either M11 or Bcl-XL, and we show that a G120E/D121A Beclin 1 mutant selectively prevents down-regulation of Beclin 1-mediated autophagy by Bcl-XL, but not by M11. We use isothermal titration calorimetry to identify a Beclin 1 BH3 domain-derived peptide that selectively binds to M11, but not to Bcl-XL. The x-ray crystal structure of this peptide bound to M11 reveals the mechanism by which the M11 BH3 domain-binding groove accommodates this M11-specific peptide. This information was used to develop a cell-permeable peptide inhibitor that selectively inhibits M11-mediated, but not Bcl-XL-mediated, down-regulation of autophagy.

Indexed as

Amino Acid SequenceAnimalsApoptosis Regulatory ProteinsAutophagybcl-X ProteinBeclin-1Cell Line, TumorCrystallography, X-RayDown-RegulationGammaherpesvirinaeHerpesviridae InfectionsHost-Pathogen InteractionsHumansMembrane ProteinsMiceModels, MolecularApoptosis Regulatory Proteinsbcl-X ProteinBeclin-1BECN1 protein, humanMembrane ProteinsPeptidesProto-Oncogene Proteins c-bcl-2Viral ProteinsAutophagyBcl-2 Family ProteinsCrystal StructureHerpesvirusHost DefenseHost-Pathogen InteractionsProtein-Protein Interactions

Identifiers

PMID24443581
PMCPMC3961636
OpenAlexW2055346100

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.