Evidence map›Paper›PMID 24443564›Full record

ArticleThe Journal of biological chemistry2014

Three-dimensional NMR structure of Hen Egg Gallin (Chicken Ovodefensin) reveals a new variation of the β-defensin fold.

Virginie Hervé, Hervé Meudal, Valérie Labas, Sophie Réhault-Godbert, Joël Gautron, Magali Berges, Nicolas Guyot, Agnès F Delmas, Yves Nys, Céline Landon

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.0field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 24 citations in OpenAlex.

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  6. Antimicrobial peptides in reptiles.Pharmaceuticals (Basel, Switzerland) · 2014
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Virginie HervéFrom Institut National de la Recherche Agronomique (INRA), UR83 Recherches Avicoles, Fonction et Régulation des Protéines de l'œuf, F-37380 Nouzilly, France; Université François Rabelais, UMR 1100, F-37032 Tours, France; INSERM, Centre d'Etude des Pathologies Respiratoires, UMR 1100/EA6305, F-37032 Tours, France.
Hervé MeudalCentre de Biophysique Moléculaire, CNRS UPR 4301, Université d'Orléans, Rue Charles Sadron, 45071 Orléans Cedex 2, France.
Valérie LabasPlate-forme d'Analyse Intégrative des Biomolécules UMR INRA 85-CNRS 7247, Université François Rabelais, Institut Français du Cheval et de l'Équitation (IFCE), F-37380 Nouzilly, France.
Sophie Réhault-GodbertFrom Institut National de la Recherche Agronomique (INRA), UR83 Recherches Avicoles, Fonction et Régulation des Protéines de l'œuf, F-37380 Nouzilly, France.
Joël GautronFrom Institut National de la Recherche Agronomique (INRA), UR83 Recherches Avicoles, Fonction et Régulation des Protéines de l'œuf, F-37380 Nouzilly, France.
Magali BergesFrom Institut National de la Recherche Agronomique (INRA), UR83 Recherches Avicoles, Fonction et Régulation des Protéines de l'œuf, F-37380 Nouzilly, France.
Nicolas GuyotFrom Institut National de la Recherche Agronomique (INRA), UR83 Recherches Avicoles, Fonction et Régulation des Protéines de l'œuf, F-37380 Nouzilly, France.
Agnès F DelmasCentre de Biophysique Moléculaire, CNRS UPR 4301, Université d'Orléans, Rue Charles Sadron, 45071 Orléans Cedex 2, France.
Yves NysFrom Institut National de la Recherche Agronomique (INRA), UR83 Recherches Avicoles, Fonction et Régulation des Protéines de l'œuf, F-37380 Nouzilly, France. Electronic address: Yves.Nys@tours.inra.fr.
Céline LandonCentre de Biophysique Moléculaire, CNRS UPR 4301, Université d'Orléans, Rue Charles Sadron, 45071 Orléans Cedex 2, France. Electronic address: celine.landon@cnrs-orleans.fr.
Université d'Orléans · FRCentre National de la Recherche Scientifique · FRInstitut Français du Cheval et de l'Équitation · FRInstitut National de la Recherche Agronomique · MA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Gallin is a 41-residue protein, first identified as a minor component of hen egg white and found to be antimicrobial against Escherichia coli. Gallin may participate in the protection of the embryo during its development in the egg. Its sequence is related to antimicrobial β-defensin peptides. In the present study, gallin was chemically synthesized 1) to further investigate its antimicrobial spectrum and 2) to solve its three-dimensional NMR structure and thus gain insight into structure-function relationships, a prerequisite to understanding its mode(s) of action. Antibacterial assays confirmed that gallin was active against Escherichia coli, but no additional antibacterial activity was observed against the other Gram-positive or Gram-negative bacteria tested. The three-dimensional structure of gallin, which is the first ovodefensin structure to have been solved to date, displays a new five-stranded arrangement. The gallin three-dimensional fold contains the three-stranded antiparallel β-sheet and the disulfide bridge array typical of vertebrate β-defensins. Gallin can therefore be unambiguously classified as a β-defensin. However, an additional short two-stranded β-sheet reveals that gallin and presumably the other ovodefensins form a new structural subfamily of β-defensins. Moreover, gallin and the other ovodefensins calculated by homology modeling exhibit atypical hydrophobic surface properties, compared with the already known vertebrate β-defensins. These specific structural features of gallin might be related to its restricted activity against E. coli and/or to other yet unknown functions. This work provides initial understanding of a critical sequence-structure-function relationship for the ovodefensin family.

Indexed as

Amino Acid SequenceAnimalsbeta-DefensinsChickensImaging, Three-DimensionalMolecular Sequence DataNuclear Magnetic Resonance, BiomolecularProtein Foldingbeta-DefensinsAntimicrobial PeptidesAvBDDefensinsHost DefenseNMROvodefensinProtein StructureSPPS

Identifiers

PMID24443564
PMCPMC3945380
OpenAlexW2081562335

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.