Evidence map›Paper›PMID 24443176›Full record

ArticleJournal of molecular neuroscience : MN2014

Genomic organization and identification of promoter regions for the BDNF gene in the pond turtle Trachemys scripta elegans.

Ganesh Ambigapathy, Zhaoqing Zheng, Joyce Keifer

Open access · greenAbstract read
In one paragraph

Article in Journal of molecular neuroscience : MN, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.4field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 5 citations in OpenAlex.

  1. Review
  2. Article
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  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Ganesh AmbigapathyNeuroscience Group, Division of Basic Biomedical Sciences, University of South Dakota Sanford School of Medicine, 414 E. Clark St., Vermillion, SD, 57010, USA, ganesh.ambigapathy@usd.edu.
Zhaoqing Zheng
Joyce Keifer
University of South Dakota · US

Funding

NEURONAL PATHWAYS UNDERLYING IN VITRO MOTOR LEARNINGR01NS051187 · NINDS · UNIVERSITY OF SOUTH DAKOTA · PI KEIFER, JOYCE · 2005 to 2013
$2.7M
NINDS NIH HHS NS051187NINDS NIH HHS R01 NS051187
6 · The paper itself

Abstract

Brain-derived neurotrophic factor (BDNF) is an important regulator of neuronal development and synaptic function. The BDNF gene undergoes significant activity-dependent regulation during learning. Here, we identified the BDNF promoter regions, transcription start sites, and potential regulatory sequences for BDNF exons I-III that may contribute to activity-dependent gene and protein expression in the pond turtle Trachemys scripta elegans (tBDNF). By using transfection of BDNF promoter/luciferase plasmid constructs into human neuroblastoma SHSY5Y cells and mouse embryonic fibroblast NIH3T3 cells, we identified the basal regulatory activity of promoter sequences located upstream of each tBDNF exon, designated as pBDNFI-III. Further, through chromatin immunoprecipitation (ChIP) assays, we detected CREB binding directly to exon I and exon III promoters, while BHLHB2, but not CREB, binds within the exon II promoter. Elucidation of the promoter regions and regulatory protein binding sites in the tBDNF gene is essential for understanding the regulatory mechanisms that control tBDNF gene expression.

Indexed as

GenomePromoter Regions, GeneticAnimalsBase SequenceBrain-Derived Neurotrophic FactorCell Line, TumorCyclic AMP Response Element-Binding ProteinExonsHumansMiceMolecular Sequence DataNIH 3T3 CellsReptilian ProteinsTurtlesBrain-Derived Neurotrophic FactorCyclic AMP Response Element-Binding ProteinReptilian Proteins

Identifiers

PMID24443176
PMCPMC4103967
OpenAlexW2085322647

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.