Evidence map›Paper›PMID 24441943›Full record

ArticleJournal of biomedical optics2014

Network signatures of nuclear and cytoplasmic density alterations in a model of pre and postmetastatic colorectal cancer.

Dhwanil Damania, Hariharan Subramanian, Vadim Backman, Eric C Anderson, Melissa H Wong, Owen J T McCarty, Kevin G Phillips

Abstract read
In one paragraph

Article in Journal of biomedical optics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Quantitative assessment of cancer cell morphology and motility using telecentric digital holographic microscopy and machine learning.Cytometry. Part A : the journal of the International Society for Analytical Cytology · 2018
    Article
  7. Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Dhwanil DamaniaNorthwestern University, Biomedical Engineering Department, Evanston, Illinois 60208.
Hariharan SubramanianNorthwestern University, Biomedical Engineering Department, Evanston, Illinois 60208.
Vadim BackmanNorthwestern University, Biomedical Engineering Department, Evanston, Illinois 60208.
Eric C AndersonOregon Health & Science University, Knight Cancer Institute, Portland, Oregon 97239.
Melissa H WongOregon Health & Science University, Knight Cancer Institute, Portland, Oregon 97239cOregon Health & Science University, School of Medicine, Department of Cell & Developmental Biology, Portland, Oregon 97239dOregon Health & Science University, School of Me.
Owen J T McCartyOregon Health & Science University, Knight Cancer Institute, Portland, Oregon 97239cOregon Health & Science University, School of Medicine, Department of Cell & Developmental Biology, Portland, Oregon 97239eOregon Health & Science University, School of Me.
Kevin G PhillipsOregon Health & Science University, School of Medicine, Department of Dermatology, Portland, Oregon 97239eOregon Health & Science University, School of Medicine, Department of Biomedical Engineering, Portland, Oregon 97239.

Funding

TRANS-NETWORK PROJECTSU54CA143869 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI WIDOM, JONATHAN · 2009 to 2013
$12.8M
TopologyU54CA143906 · NCI · UNIVERSITY OF SOUTHERN CALIFORNIA · PI KUHN, PETER · 2009 to 2014
$10.2M
Novel Biophotonics Methodology for Colon Cancer ScreeningR01CA128641 · NCI · NORTHWESTERN UNIVERSITY · PI BACKMAN, VADIM · 2008 to 2012
$7.3M
Nanoscale/Molecular analysis of Fecal Colonocytes for Colorectal Cancer ScreeningR01CA165309 · NCI · NORTHWESTERN UNIVERSITY · PI BACKMAN, VADIM, ROY, HEMANT K. · 2012 to 2016
$2.8M
NCI NIH HHS R01 CA128641NCI NIH HHS R01CA128641NCI NIH HHS R01 CA165309NCI NIH HHS R01CA165309NCI NIH HHS U54 CA143869NCI NIH HHS U54CA143869NCI NIH HHS U54 CA143906
6 · The paper itself

Abstract

Cells contributing to the pathogenesis of cancer possess cytoplasmic and nuclear structural alterations that accompany their aberrant genetic, epigenetic, and molecular perturbations. Although it is known that architectural changes in primary and metastatic tumor cells can be quantified through variations in cellular density at the nanometer and micrometer spatial scales, the interdependent relationships among nuclear and cytoplasmic density as a function of tumorigenic potential has not been thoroughly investigated. We present a combined optical approach utilizing quantitative phase microscopy and partial wave spectroscopic microscopy to perform parallel structural characterizations of cellular architecture. Using the isogenic SW480 and SW620 cell lines as a model of pre and postmetastatic transition in colorectal cancer, we demonstrate that nuclear and cytoplasmic nanoscale disorder, micron-scale dry mass content, mean dry mass density, and shape metrics of the dry mass density histogram are uniquely correlated within and across different cellular compartments for a given cell type. The correlations of these physical parameters can be interpreted as networks whose nodal importance and level of connection independence differ according to disease stage. This work demonstrates how optically derived biophysical parameters are linked within and across different cellular compartments during the architectural orchestration of the metastatic phenotype.

Indexed as

Lymphatic MetastasisNeoplasm MetastasisBiophysical PhenomenaCell Line, TumorCell NucleusColorectal NeoplasmsCytoplasmEpigenesis, GeneticHumansMicroscopyOptics and PhotonicsPhenotypeSpectrophotometry

Identifiers

PMID24441943
PMCPMC4019418

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.